PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn101441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family DBB
Protein Properties Length: 365aa    MW: 41108.8 Da    PI: 7.6418
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn101441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-0683115436
    zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 
                   C+ ++++e+  fC  ++  lC+ C  + H+ 
  Achn101441  83 IQCDVCGKEEAFVFCSADEAALCDGCDRQVHHA 115
                 57***************************9744 PP
2zf-B_box28.43.3e-09135174239
    zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 
                 e++ C+ + + +++lfC++++  lC++C l +H+   Ht+
  Achn101441 135 EAPLCDICLDRRAILFCQEDRAILCRECDLPIHQAneHTL 174
                 6799*****************************7688987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.49580127IPR000315B-box-type zinc finger
SMARTSM003361.2E-780127IPR000315B-box-type zinc finger
CDDcd000213.51E-583113No hitNo description
SMARTSM003362.4E-15134181IPR000315B-box-type zinc finger
PROSITE profilePS5011910.054134181IPR000315B-box-type zinc finger
PfamPF006431.3E-7135175IPR000315B-box-type zinc finger
CDDcd000211.55E-7137181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFKKNSIKTR YFNLRKCIRF RTSGGGCYES NSETLPDVVG GFCLVEGFRR QEKFSLSRRV  60
GNKECETRII IDRLERERER MKIQCDVCGK EEAFVFCSAD EAALCDGCDR QVHHANKLVE  120
KHLRFALLKP SSAKEAPLCD ICLDRRAILF CQEDRAILCR ECDLPIHQAN EHTLKHNRFL  180
LTGARLSPYS YSSPPSHPTS SSSNACHLTA HSEIKNSVSI EHFSNPSLCD KALPASTSTS  240
TNCRDLDQCM SQENLVSNYS ISDYLMGTLP GWQADDFLNP SDSSNGFCKF LDHVVESNLC  300
AFPSEDLGIC VPQAPIQSSY IPLNGLLKGC EEAQDVMKSS RKWKQDGFTV LRFSHPLKKL  360
RQLW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080226.11e-100B-box zinc finger protein 20-like
TrEMBLA0A2R6R1J10.0A0A2R6R1J1_ACTCH; B-box zinc finger protein
STRINGEOY149103e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-62salt tolerance homolog2