PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn100191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 30067.6 Da PI: 6.8458 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk+F + L H +H Achn100191 146 YRCETCGKVFHSFPALDGHRTSH 168 9*********9988888888777 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Achn100191 191 HECPICYKVFGSGQALGGHKRSH 213 79**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-7 | 144 | 213 | No hit | No description |
SMART | SM00355 | 0.0046 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.0E-7 | 146 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.928 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-13 | 190 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 191 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MRSHFANLPI PPKTQQKKQL SDSTESTESA ASLSSSERES EEKGLVYRLR ENPKKSFRVV 60 DPEFMESVVQ DRESETESPR NPTRQPRSKR TRKMREPSST ELEPVSSVSD TAPEEDMALC 120 LMMLSRDTWS SSDESSELRP GQTRKYRCET CGKVFHSFPA LDGHRTSHMK NEDLSEQNRS 180 VGTKIGNHKT HECPICYKVF GSGQALGGHK RSHVVAKIGE CLVAKKCGKS LIDLNLPAPI 240 EDDDFSTQLE VSTISDVEFV NSITIHSH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063607.1 | 3e-84 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A2R6Q869 | 0.0 | A0A2R6Q869_ACTCH; Zinc finger protein | ||||
STRING | XP_010258927.1 | 3e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-34 | C2H2-like zinc finger protein |