PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn100191

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 269aa MW: 30067.6 Da PI: 6.8458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn100191	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00099	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk+F + L H +H Achn100191 146 YRCETCGKVFHSFPALDGHRTSH 168 9*********9988888888777 PP
2	zf-C2H2	11	0.0013	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Achn100191 191 HECPICYKVFGSGQALGGHKRSH 213 79**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.45E-7	144	213	No hit	No description
SMART	SM00355	0.0046	146	168	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.0E-7	146	170	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.928	146	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.0E-13	190	213	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.25	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	191	218	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MRSHFANLPI PPKTQQKKQL SDSTESTESA ASLSSSERES EEKGLVYRLR ENPKKSFRVV 60 DPEFMESVVQ DRESETESPR NPTRQPRSKR TRKMREPSST ELEPVSSVSD TAPEEDMALC 120 LMMLSRDTWS SSDESSELRP GQTRKYRCET CGKVFHSFPA LDGHRTSHMK NEDLSEQNRS 180 VGTKIGNHKT HECPICYKVF GSGQALGGHK RSHVVAKIGE CLVAKKCGKS LIDLNLPAPI 240 EDDDFSTQLE VSTISDVEFV NSITIHSH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028063607.1	3e-84	zinc finger protein ZAT1-like
TrEMBL	A0A2R6Q869	0.0	A0A2R6Q869_ACTCH; Zinc finger protein
STRING	XP_010258927.1	3e-72	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-34	C2H2-like zinc finger protein