PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn094131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 386aa MW: 44314.4 Da PI: 7.2484 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81 | 2e-25 | 29 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn Y++ +GFs+r+ +s+ks+++g ++r+fvC+k+g+r ++k+ +++r+etrt+C+a++ +++++ ++kw+v +e++HnH+l Achn094131 29 EFYNVYGRVMGFSIRICYSTKSQKDGVLISRKFVCTKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117 6******************************************9998.88899******************99***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-21 | 29 | 117 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-27 | 241 | 334 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MNVKENEHFI EDYTPCLQKE FKSKEAAYEF YNVYGRVMGF SIRICYSTKS QKDGVLISRK 60 FVCTKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLP 120 ECAHMMKSQR TIHEAQAINV DIAADNGLSL KASHDLLSAQ VGGKEFLGFT REDQKNYLRG 180 RRQKSLEYGE SGALLGYFQK QAFKNPYFYY AVQLDSDEMI TNIFWADHEM ITDYGLFGDA 240 ISFDTTFRTN KECRPFAIFT GFNHYRMTTI FGASLLYDET VESFEWLFNT FLHAMSGKKP 300 ITIFTDQDAA MAKAISRVLS DVTHGLCTFH LNQNALKHLG HLFKGGSTFG RELNICIFGY 360 EDEQELVEAW DALVKKYHLH DNIIC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093247.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_028126747.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3Q7Y261 | 1e-134 | A0A3Q7Y261_CICAR; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_008351321.1 | 1e-138 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-83 | FAR1-related sequence 5 |