PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn094131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 386aa    MW: 44314.4 Da    PI: 7.2484
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn094131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1812e-2529117189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fYn Y++ +GFs+r+ +s+ks+++g  ++r+fvC+k+g+r ++k+     +++r+etrt+C+a++ +++++ ++kw+v  +e++HnH+l
  Achn094131  29 EFYNVYGRVMGFSIRICYSTKSQKDGVLISRKFVCTKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117
                 6******************************************9998.88899******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2129117IPR004330FAR1 DNA binding domain
PfamPF105512.6E-27241334IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNVKENEHFI EDYTPCLQKE FKSKEAAYEF YNVYGRVMGF SIRICYSTKS QKDGVLISRK  60
FVCTKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLP  120
ECAHMMKSQR TIHEAQAINV DIAADNGLSL KASHDLLSAQ VGGKEFLGFT REDQKNYLRG  180
RRQKSLEYGE SGALLGYFQK QAFKNPYFYY AVQLDSDEMI TNIFWADHEM ITDYGLFGDA  240
ISFDTTFRTN KECRPFAIFT GFNHYRMTTI FGASLLYDET VESFEWLFNT FLHAMSGKKP  300
ITIFTDQDAA MAKAISRVLS DVTHGLCTFH LNQNALKHLG HLFKGGSTFG RELNICIFGY  360
EDEQELVEAW DALVKKYHLH DNIIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093247.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028126747.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7Y2611e-134A0A3Q7Y261_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008351321.11e-138(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-83FAR1-related sequence 5