PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn091321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HSF | ||||||||
Protein Properties | Length: 481aa MW: 53922.6 Da PI: 6.2748 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.7 | 1.4e-36 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++e+i w+e g++fvv+++++f+k++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+g+kell +i+ Achn091321 10 FLMKTYKLVDDQSTDEVIGWNEGGTTFVVWKTDNFSKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLAQIR 97 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Achn091321 98 RRKTA 102 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-57 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-37 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.45E-33 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.9E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.5E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.5E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.5E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF47473 | 2.67E-34 | 305 | 474 | IPR011992 | EF-hand domain pair |
Gene3D | G3DSA:1.10.238.10 | 5.4E-16 | 309 | 385 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 6.005 | 310 | 327 | IPR002048 | EF-hand domain |
CDD | cd00051 | 1.96E-8 | 314 | 399 | No hit | No description |
PROSITE profile | PS50222 | 14.151 | 369 | 404 | IPR002048 | EF-hand domain |
SMART | SM00054 | 2.5E-8 | 373 | 401 | IPR002048 | EF-hand domain |
Pfam | PF00036 | 2.3E-8 | 374 | 400 | IPR002048 | EF-hand domain |
PROSITE pattern | PS00018 | 0 | 382 | 394 | IPR018247 | EF-Hand 1, calcium-binding site |
Gene3D | G3DSA:1.10.238.10 | 1.5E-28 | 386 | 472 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 13.983 | 406 | 441 | IPR002048 | EF-hand domain |
Pfam | PF13499 | 6.7E-13 | 409 | 472 | IPR002048 | EF-hand domain |
SMART | SM00054 | 0.0013 | 410 | 438 | IPR002048 | EF-hand domain |
CDD | cd00051 | 5.77E-18 | 410 | 472 | No hit | No description |
PROSITE pattern | PS00018 | 0 | 419 | 431 | IPR018247 | EF-Hand 1, calcium-binding site |
PROSITE profile | PS50222 | 13.063 | 442 | 477 | IPR002048 | EF-hand domain |
SMART | SM00054 | 9.3E-7 | 446 | 474 | IPR002048 | EF-hand domain |
PROSITE pattern | PS00018 | 0 | 455 | 467 | IPR018247 | EF-Hand 1, calcium-binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MGQRSVPAPF LMKTYKLVDD QSTDEVIGWN EGGTTFVVWK TDNFSKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLAQIRRRK TATSAPAAAA KSAAGPSSPS 120 NSGNDLGSTS MSSPDSKNAG SVDAPAARAQ LTDLSDENRK LKRDNEMLTS ELARAKKHCG 180 ELIAFLTEYI KVAPDQMDHI MRQGSSGLTL GGLDGEIGST GHNNCNDDDP NNQEIMKEEN 240 DEGLKLFGVW VKGDGKKRGR EDNLGFGGAH RKEMKRVEFT APWMTGKASL YRVASRKDKP 300 RGRHHGLTQQ KRQEIKEAFE LFDTDGSDLS PVSCLSAICC SFFTYMFPTF TSYVVTPKID 360 CILVDLATDL TKQIKQMIED VDKDGSGAID FDEFVHMMTA KIGERDSKEE LMKAFHIIDQ 420 DKSGKISSAD IKRIAKELGE NFTDREIQEM IEEADRDRDG EVSVDDFMRM MRRTSYGYYN 480 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kf9_A | 7e-48 | 306 | 476 | 1 | 148 | Caltractin |
3kf9_C | 7e-48 | 306 | 476 | 1 | 148 | Caltractin |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028114097.1 | 1e-127 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-112 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A2R6RL50 | 0.0 | A0A2R6RL50_ACTCH; Heat shock factor protein | ||||
STRING | VIT_07s0031g00670.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9991 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 9e-74 | heat shock factor 4 |
Publications ? help Back to Top | |||
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