PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn091321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 481aa    MW: 53922.6 Da    PI: 6.2748
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn091321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e+i w+e g++fvv+++++f+k++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell +i+
    Achn091321  10 FLMKTYKLVDDQSTDEVIGWNEGGTTFVVWKTDNFSKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLAQIR 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn091321  98 RRKTA 102
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-57699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF474732.67E-34305474IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.105.4E-16309385IPR011992EF-hand domain pair
PROSITE profilePS502226.005310327IPR002048EF-hand domain
CDDcd000511.96E-8314399No hitNo description
PROSITE profilePS5022214.151369404IPR002048EF-hand domain
SMARTSM000542.5E-8373401IPR002048EF-hand domain
PfamPF000362.3E-8374400IPR002048EF-hand domain
PROSITE patternPS000180382394IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:1.10.238.101.5E-28386472IPR011992EF-hand domain pair
PROSITE profilePS5022213.983406441IPR002048EF-hand domain
PfamPF134996.7E-13409472IPR002048EF-hand domain
SMARTSM000540.0013410438IPR002048EF-hand domain
CDDcd000515.77E-18410472No hitNo description
PROSITE patternPS000180419431IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022213.063442477IPR002048EF-hand domain
SMARTSM000549.3E-7446474IPR002048EF-hand domain
PROSITE patternPS000180455467IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGQRSVPAPF LMKTYKLVDD QSTDEVIGWN EGGTTFVVWK TDNFSKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLAQIRRRK TATSAPAAAA KSAAGPSSPS  120
NSGNDLGSTS MSSPDSKNAG SVDAPAARAQ LTDLSDENRK LKRDNEMLTS ELARAKKHCG  180
ELIAFLTEYI KVAPDQMDHI MRQGSSGLTL GGLDGEIGST GHNNCNDDDP NNQEIMKEEN  240
DEGLKLFGVW VKGDGKKRGR EDNLGFGGAH RKEMKRVEFT APWMTGKASL YRVASRKDKP  300
RGRHHGLTQQ KRQEIKEAFE LFDTDGSDLS PVSCLSAICC SFFTYMFPTF TSYVVTPKID  360
CILVDLATDL TKQIKQMIED VDKDGSGAID FDEFVHMMTA KIGERDSKEE LMKAFHIIDQ  420
DKSGKISSAD IKRIAKELGE NFTDREIQEM IEEADRDRDG EVSVDDFMRM MRRTSYGYYN  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kf9_A7e-483064761148Caltractin
3kf9_C7e-483064761148Caltractin
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114097.11e-127heat shock factor protein HSF24
SwissprotP223351e-112HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2R6RL500.0A0A2R6RL50_ACTCH; Heat shock factor protein
STRINGVIT_07s0031g00670.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-74heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]