PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn090901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 455aa    MW: 52004.3 Da    PI: 9.0029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn090901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-203286256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++R +f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Achn090901 32 KNRKRFSAEQIRSLESMFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWK 86
                89****************************************************9 PP
2HD-ZIP_I/II117.38.9e-3833124293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +++r+s+eq+++LE++Fe+e+kLep++Kv+lareLglqprqva+WFqnrRAR+k+k++E+ y++Lk++yd+++++ e+L+ke++ L  +l+e
   Achn090901  33 NRKRFSAEQIRSLESMFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWKSKKIEQSYRVLKANYDNMHSQFESLKKEKQFLLIQLQE 124
                  689***********************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-201389IPR009057Homeodomain-like
SuperFamilySSF466895.01E-201989IPR009057Homeodomain-like
PROSITE profilePS5007119.0952888IPR001356Homeobox domain
SMARTSM003891.5E-183092IPR001356Homeobox domain
PfamPF000461.1E-173286IPR001356Homeobox domain
CDDcd000862.23E-143789No hitNo description
PRINTSPR000311.3E-55968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000311.3E-56884IPR000047Helix-turn-helix motif
PfamPF021837.9E-1288129IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:3.20.20.1006.4E-20217313IPR023210NADP-dependent oxidoreductase domain
CDDcd066609.48E-36217436IPR023210NADP-dependent oxidoreductase domain
SuperFamilySSF514306.68E-37217440IPR023210NADP-dependent oxidoreductase domain
PfamPF002481.2E-16221311IPR023210NADP-dependent oxidoreductase domain
PRINTSPR000693.4E-5252276IPR020471Aldo/keto reductase
PRINTSPR000693.4E-5353370IPR020471Aldo/keto reductase
PROSITE patternPS000620353370IPR018170Aldo/keto reductase, conserved site
Gene3DG3DSA:3.20.20.1004.2E-4358392IPR023210NADP-dependent oxidoreductase domain
PfamPF002481.8E-6392436IPR023210NADP-dependent oxidoreductase domain
Gene3DG3DSA:3.20.20.1003.3E-11393441IPR023210NADP-dependent oxidoreductase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009443Biological Processpyridoxal 5'-phosphate salvage
GO:0042821Biological Processpyridoxal biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0050236Molecular Functionpyridoxine:NADP 4-dehydrogenase activity
GO:0070402Molecular FunctionNADPH binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEGEVYSALP LPAETAEFES EATPNPRKKK NKNRKRFSAE QIRSLESMFE SETKLEPRKK  60
VQLARELGLQ PRQVAIWFQN RRARWKSKKI EQSYRVLKAN YDNMHSQFES LKKEKQFLLI  120
QLQELSDLLE QNHDQDSRSK DLERESTPGG SDGGETRRDL KTKPSCFKEC SDRALTYSDD  180
DDGGNAKPCP QEEAEILNNG GACLMFQWNW QVKVGPMSVS PMGFGTWAWG NQLLWGYDEA  240
MDTELQRTFN LAIENGINLF DTADSYGTGR LIGQSEKLLG KFIREFQGQK QVRDNIVIAT  300
KFAAYPWRLT PGQFVNACKF CPWFQMISVA KSWFKFQILS VADYIKFQHQ YIIVITREVG  360
LVRAVGVSNY GPKQLVKIHD YLKARGVPLC SAQVAINWCI CKGTIPIPGV KTVKQAEENL  420
GALGWRLSSD ELLQLEYAAR ESPRRMIQNI FQTR*
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the reduction of pyridoxal (PL) with NADPH and oxidation of pyridoxine (PN) with NADP(+). Involved in the PLP salvage pathway. {ECO:0000269|PubMed:21533842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278852.11e-129pyridoxal reductase, chloroplastic
SwissprotQ56Y421e-77PLR1_ARATH; Pyridoxal reductase, chloroplastic
TrEMBLA0A103YJH11e-146A0A103YJH1_CYNCS; Aldo/keto reductase
STRINGEOY236721e-129(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-38homeobox 7
Publications ? help Back to Top
  1. Herrero S,González E,Gillikin JW,Vélëz H,Daub ME
    Identification and characterization of a pyridoxal reductase involved in the vitamin B6 salvage pathway in Arabidopsis.
    Plant Mol. Biol., 2011. 76(1-2): p. 157-69
    [PMID:21533842]