PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn089521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 19691.3 Da PI: 9.7291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.7 | 3.8e-56 | 29 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yLkkk+++++++l +vik+vd+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k Achn089521 29 VPPGFRFHPTDEELVDYYLKKKIASRRIDL-DVIKDVDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS-K 125 69****************************.9***************954555554445**************************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +lvg++ktLv+y+grap+g+k+dW+mheyrl Achn089521 126 YSLVGMRKTLVYYRGRAPNGQKSDWIMHEYRL 157 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-57 | 25 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.417 | 29 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-29 | 30 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MFQNTLTRGA IENAGFCRAR GNMNTFSHVP PGFRFHPTDE ELVDYYLKKK IASRRIDLDV 60 IKDVDLYKIE PWDLQELCKI GTEEQSDWYF FSHKDKKYPT GTRTNRATKA GFWKATGRDK 120 AIYSKYSLVG MRKTLVYYRG RAPNGQKSDW IMHEYRLDTS ENGTPLASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 28 | 157 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624113.1 | 7e-99 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 4e-96 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A2R6PIF6 | 1e-103 | A0A2R6PIF6_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_02s0154g00020.t01 | 4e-98 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 2e-98 | NAC 007 |
Publications ? help Back to Top | |||
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