PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn089301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 719aa    MW: 80001.9 Da    PI: 5.3957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn089301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49e-24404485286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++e++ Li +rre++  ++++k++k+lW+++s+kmre+gf rs+++C++kw+nl k++kk k ++++  +    ++ y+++le
  Achn089301 404 WAQEETRSLIGLRREVDALFNTSKSNKHLWDQISSKMREKGFDRSATMCTDKWRNLLKEFKKAKLQDRSS-A--LAKMLYYKELE 485
                 ****************************************************************999984.3..34589999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525408.47E-5215211IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.4E-10321209IPR027417P-loop containing nucleoside triphosphate hydrolase
HamapMF_0204035.71822311IPR019591Mrp/NBP35 ATP-binding protein
PfamPF106091.5E-8127211IPR019591Mrp/NBP35 ATP-binding protein
CDDcd020373.18E-8430278No hitNo description
PROSITE patternPS012150135151IPR000808Mrp, conserved site
Gene3DG3DSA:3.40.50.3004.4E-103244309IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525408.47E-52246292IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:1.10.10.602.4E-4396465IPR009057Homeodomain-like
PROSITE profilePS500908.467396460IPR017877Myb-like domain
SMARTSM007170.003400462IPR001005SANT/Myb domain
CDDcd122031.21E-28402467No hitNo description
PfamPF138371.1E-17403486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MGTWNSIPFW PLIRWYLVAI VERMTTVKHK ILVLSGKGGV GKSTFSAQLA FALAAMDFQV  60
GLLDIDICGP SIPKMLGLEG QEIHQSNLGW SPVYVESNLG VMSIGFMLPH PDEAVIWRGP  120
RKNGIIKQFL KDVYWGELDF LVVDAPPGTS DEHISIVQFL QATGIDGAII VTTPQQVSLI  180
DVRKEVSFCK KVGLQVLGVV ENMSGLCQPV SDLKFLRSTE SGEQTDVTEW VMKYMRERAP  240
EMLDVVAYSE VFDSSSGGAA KMCSDMGVPF LGRVPLDPRL CKAAEEGRSC FDDNKCGLSA  300
AALKRIIDKL VADGMVSSTD CDSRLGFVVL ELRISNRNMY LEKPRPIDFY KGEESDMAIE  360
ISSNGDLPHY PHQQQQPPHQ MIPGDSSGGE DHEAKAPKKR AETWAQEETR SLIGLRREVD  420
ALFNTSKSNK HLWDQISSKM REKGFDRSAT MCTDKWRNLL KEFKKAKLQD RSSALAKMLY  480
YKELEDLLRD RGKNGPYKSP SSSKVDSYIQ FSDKGLEDGN IPFGSVEANG QSTVNLERPL  540
DHDGDPLAIT AADAVGANGV PPWNWRENPG TGGEGHSAYG GRVITVKWGE YTRRIGIDGT  600
ANAIKEAIKS AFHLRTRRAF CLEDEDNVIR SLDRDMPLGN YTLHLDEGIS IKVCLYDEAD  660
HMAVRAEDKT LYTEDEFRDF LTRNGFMGLR EINGYRTFDN LDDLRPGAVY QGVRLLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g2g_A4e-70242883243Cytosolic Fe-S cluster assembly factor CFD1
6g2g_B4e-70242883243Cytosolic Fe-S cluster assembly factor CFD1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055162.10.0trihelix transcription factor GT-4-like
TrEMBLA0A2R6P9760.0A0A2R6P976_ACTCH; Trihelix transcription factor GT-1 like
STRINGXP_010248872.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-160Trihelix family protein