PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn088571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 131aa MW: 15096.8 Da PI: 6.618 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.8 | 1.1e-10 | 42 | 129 | 1 | 71 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkke 71 k+Y++Y+++ F +r+++s+k ++++ +t+ fvC keg ++ kk +k++r+ ++ ++gC+a+l++k++ Achn088571 42 KYYEDYGRQNSFWIRTRTSSKGqNQSNDVTSVLFVCAKEGMYVRKAKKegvkgndereendevlPKKRKRSCSTAKCGCNAQLRIKRD 129 69*************9988876466778************9988888889***********9998899999999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-8 | 42 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEESFGLYDF EVEDLQTPNN DVERLEAPSS GMFFETIEEA RKYYEDYGRQ NSFWIRTRTS 60 SKGQNQSNDV TSVLFVCAKE GMYVRKAKKE GVKGNDEREE NDEVLPKKRK RSCSTAKCGC 120 NAQLRIKRDK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289266.1 | 1e-35 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6R5G6 | 1e-51 | A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_004289266.1 | 5e-35 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 7e-09 | FAR1-related sequence 10 |