PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 353aa    MW: 38449.4 Da    PI: 5.452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11177222555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ + f  L  ++P +     kK++K ++L +Av+Y+k+Lq
  Achn088391 177 HIIAERKRREQLSQLFVALSGIVPGL-----KKMDKTSVLGEAVKYLKQLQ 222
                 899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.507172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16173238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-11177226No hitNo description
Gene3DG3DSA:4.10.280.109.4E-15177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-9177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEDPLFPSDI MESFEEELAA VLGEEYQQHY SFSSESNSSN SPNLIPTSSS TTNLLDSSPT  60
ELAQQDGSER PTKHHKPNNT YNSWPTTTIT SIPSIDHQAA PSGSSTRFIL SFGNSNLTEI  120
PKVPLGTVNP QNEAVAGILM SQGSIGNREE GVAKSSTPSQ GAKKTSTPRP ASQTYDHIIA  180
ERKRREQLSQ LFVALSGIVP GLKKMDKTSV LGEAVKYLKQ LQERVKTLEE QSTKQTMESV  240
VLVKKSQLLL EDEAGSSDDN FVGGASKPLP EIEARLCNKN VLLKIHCEKH KGLLVKILSE  300
MENLNLSVIN TSVTRFGSLA LDITIIAEME TESCLTVKDL VSNLLPALRH FV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073652.11e-111transcription factor bHLH18-like
SwissprotQ9T0723e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2R6S1780.0A0A2R6S178_ACTCH; Transcription factor bHLH25 like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-49bHLH family protein