PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn088151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | YABBY | ||||||||
Protein Properties | Length: 309aa MW: 33878.7 Da PI: 5.5572 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 133.6 | 2.5e-41 | 52 | 115 | 107 | 170 |
YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Achn088151 52 DELPNPPAANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 115 67899999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-38 | 56 | 115 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-7 | 61 | 108 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-4 | 64 | 107 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MRGLLPPSAN QLHLGHAFFS PQNLLEDIQN SSPNLLINHP NPNGLVTPVR IDELPNPPAA 60 NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA AAKNWAHFPH IHFGLSSDQP 120 VKKANVRQQL EELVVASARP DKGSRGGETS VSSITVKHIE IDGRSIAVMF HNGAVAGNEA 180 DIEVHENLSE TENLSEVLKQ GPREDTSGKQ LEDVLQTLGD KDSSSLLDVR QNAQEKPQCE 240 SPAIGEDKDM GKATHEVMKK SYGTPAYEEV TNLESSDILE SIPKNPETEH RLAQPPEPNP 300 EHPPTIPV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB938212 | 1e-112 | AB938212.1 Sarracenia purpurea FIL mRNA for filamentous flower, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-47 | YABBY family protein |