PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn088151

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

YABBY

Protein Properties

Length: 309aa MW: 33878.7 Da PI: 5.5572

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn088151	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	133.6	2.5e-41	52	115	107	170
YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Achn088151 52 DELPNPPAANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 115 67899999******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-38	56	115	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-7	61	108	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.3E-4	64	107	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MRGLLPPSAN QLHLGHAFFS PQNLLEDIQN SSPNLLINHP NPNGLVTPVR IDELPNPPAA 60 NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA AAKNWAHFPH IHFGLSSDQP 120 VKKANVRQQL EELVVASARP DKGSRGGETS VSSITVKHIE IDGRSIAVMF HNGAVAGNEA 180 DIEVHENLSE TENLSEVLKQ GPREDTSGKQ LEDVLQTLGD KDSSSLLDVR QNAQEKPQCE 240 SPAIGEDKDM GKATHEVMKK SYGTPAYEEV TNLESSDILE SIPKNPETEH RLAQPPEPNP 300 EHPPTIPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB938212	1e-112	AB938212.1 Sarracenia purpurea FIL mRNA for filamentous flower, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-47	YABBY family protein