PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn087801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 386aa    MW: 42924.4 Da    PI: 4.5574
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn087801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16250286135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ k++
  Achn087801 250 CQHCGVSEtsTPAMRRGPAGPRTLCNACGLMWANKEM 286
                 ******9999**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513208.616138173IPR010399Tify domain
PROSITE profilePS5101712.719177219IPR010402CCT domain
PfamPF062037.9E-15177218IPR010402CCT domain
SMARTSM004016.2E-10244300IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-14248287IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.85E-10248289No hitNo description
CDDcd002021.33E-13249291No hitNo description
PfamPF003209.6E-14250285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440250277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSVKKDGDVE EHDDENNDYD EFNKNAEPSF AIRTFHVNIS LIGTYKYKNQ RFQTASSPGL  60
FDFDVVVVVV VFVMATANPR PLQARPYEDH LQLTAIQIED DDDGEYEDGG DDDMEEADGH  120
ATEANVSDRR RYGGGVVVAS RTSELTLAFE GEVYVFPAVT PEKDVDDNPK RSNISRRIAS  180
LVRFREKRKE RCFDKKIRYS VRKEVAQRMH RKNGQFASLK ANSGSSTWDS AKSYLQGNGT  240
PHSETVVRRC QHCGVSETST PAMRRGPAGP RTLCNACGLM WANKEMPIDM KPLIMEGENS  300
LGNQGDPGTP EDPSKAVTGR IDNPSVNPDE EEDLCRTAED HANSLPVGIV NSSHNLDEQF  360
WEVQETLLEL ASASETEIDI PANFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4773298e-32AM477329.2 Vitis vinifera contig VV78X060343.1, whole genome shotgun sequence.
GenBankAM4886718e-32AM488671.2 Vitis vinifera contig VV78X090115.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084879.11e-142GATA transcription factor 24-like isoform X1
RefseqXP_028084880.11e-142GATA transcription factor 24-like isoform X2
RefseqXP_028084881.11e-142GATA transcription factor 24-like isoform X3
RefseqXP_028084882.11e-142GATA transcription factor 24-like isoform X1
TrEMBLA0A2R6RNG10.0A0A2R6RNG1_ACTCH; GATA transcription factor
STRINGVIT_18s0001g07730.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-49ZIM-LIKE 2