PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn087061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 366aa MW: 40159.9 Da PI: 10.3745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn087061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	2.9e-10	31	79	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +E+ RR+riN+ +++Lr+l+ ++ + Ka++L+++++ +k+L Achn087061 31 KKHALAEQVRRRRINDHIDTLRQLIAPS---MTSRTVKASVLTETIRQMKEL 79 5799*********************9...99***********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-10	26	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.427	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.73E-8	31	81	No hit	No description
Pfam	PF00010	4.4E-8	31	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-9	32	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	34	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.9E-6	130	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MLPKSMNKRP LMDGGDCFSR SQKQKTEEAA KKHALAEQVR RRRINDHIDT LRQLIAPSMT 60 SRTVKASVLT ETIRQMKELK KRAAEAALKF KGQGWSCGGA ATSGSFTFPD ESDEATVSYC 120 EGGEGRMVKA TVCCEDRLGL NRELTEAIQS VGASAVRAEM ATVGGRTKAE VVVRLRQGGG 180 EEDVGSLTRA LKALVECRAS GFSSLGRAMA FASIRLLKLL IAMKLKEIEG EPLLDALALK 240 AFIRLLRLEQ PLRKGLLQRL LLNVCANSVT RPTLVRLLLD MIKPKTESRV IGLTAVNSQR 300 FFGCQSIFVY GRSQLVDGAY FLLISMYRPS SPGFAPATCD FDLSGHKTTP RLPIEMVRFN 360 LQIFV*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MLPKSMNKRP LMDGGDCFSR SQKQKTEEAA KKHALAEQVR RRRINDHIDT LRQLIAPSMT  60
SRTVKASVLT ETIRQMKELK KRAAEAALKF KGQGWSCGGA ATSGSFTFPD ESDEATVSYC  120
EGGEGRMVKA TVCCEDRLGL NRELTEAIQS VGASAVRAEM ATVGGRTKAE VVVRLRQGGG  180
EEDVGSLTRA LKALVECRAS GFSSLGRAMA FASIRLLKLL IAMKLKEIEG EPLLDALALK  240
AFIRLLRLEQ PLRKGLLQRL LLNVCANSVT RPTLVRLLLD MIKPKTESRV IGLTAVNSQR  300
FFGCQSIFVY GRSQLVDGAY FLLISMYRPS SPGFAPATCD FDLSGHKTTP RLPIEMVRFN  360
LQIFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107684.1	4e-51	transcription factor bHLH30
TrEMBL	A0A2R6Q0C9	1e-131	A0A2R6Q0C9_ACTCH; Transcription factor bHLH30 like
STRING	XP_010107684.1	1e-50	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13713	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	5e-18	bHLH family protein