PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn087061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 40159.9 Da PI: 10.3745 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 2.9e-10 | 31 | 79 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +E+ RR+riN+ +++Lr+l+ ++ + Ka++L+++++ +k+L Achn087061 31 KKHALAEQVRRRRINDHIDTLRQLIAPS---MTSRTVKASVLTETIRQMKEL 79 5799***********************9...99*************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-10 | 26 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.427 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.73E-8 | 31 | 81 | No hit | No description |
Pfam | PF00010 | 4.4E-8 | 31 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-9 | 32 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-7 | 34 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 9.9E-6 | 130 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MLPKSMNKRP LMDGGDCFSR SQKQKTEEAA KKHALAEQVR RRRINDHIDT LRQLIAPSMT 60 SRTVKASVLT ETIRQMKELK KRAAEAALKF KGQGWSCGGA ATSGSFTFPD ESDEATVSYC 120 EGGEGRMVKA TVCCEDRLGL NRELTEAIQS VGASAVRAEM ATVGGRTKAE VVVRLRQGGG 180 EEDVGSLTRA LKALVECRAS GFSSLGRAMA FASIRLLKLL IAMKLKEIEG EPLLDALALK 240 AFIRLLRLEQ PLRKGLLQRL LLNVCANSVT RPTLVRLLLD MIKPKTESRV IGLTAVNSQR 300 FFGCQSIFVY GRSQLVDGAY FLLISMYRPS SPGFAPATCD FDLSGHKTTP RLPIEMVRFN 360 LQIFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107684.1 | 4e-51 | transcription factor bHLH30 | ||||
TrEMBL | A0A2R6Q0C9 | 1e-131 | A0A2R6Q0C9_ACTCH; Transcription factor bHLH30 like | ||||
STRING | XP_010107684.1 | 1e-50 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 5e-18 | bHLH family protein |