PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn082261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GeBP
Protein Properties Length: 363aa    MW: 40465 Da    PI: 6.8289
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn082261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.51.8e-37134229297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 lfqrlwse+Dei +L+G++++++k+g++p+ d+d+f++f+kks+++ v+++ql  K rrLKkK++++  k k+g + sfs++h+qk++e+skk+Wg
  Achn082261 134 LFQRLWSEDDEIEILKGVMEYRTKKGVDPVTDMDDFHDFIKKSLHVAVTRTQLYHKFRRLKKKYENNAGKGKNGVDRSFSNPHEQKAYEWSKKVWG 229
                 79*********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.4E-34135229IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPNRLPEAE AQGSPSSDEE VEGESSEENE SQSESDEEED KTSTPSTQTP SVPTKPGESG  60
SESDSPGLTI KPISSKPMED PSKATTKKPR SKSSSAVVEK ENKINHDSKR AKKKAVDSDK  120
VVEETAASDS KKQLFQRLWS EDDEIEILKG VMEYRTKKGV DPVTDMDDFH DFIKKSLHVA  180
VTRTQLYHKF RRLKKKYENN AGKGKNGVDR SFSNPHEQKA YEWSKKVWGG EDNGIGGDSV  240
KVNGKTKKNK SQNQNQNQNQ NQREIVVALP IIDRAKEGAK TEVAKSAGVS RSIGVKRNFG  300
ESSLEDEIMK DGLELIGGSK KLELEEKWKK LREEEMELYL KRVDLIREQT KLVLEAMKSS  360
GH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098167.11e-108GLABROUS1 enhancer-binding protein-like
TrEMBLA0A2R6PYB30.0A0A2R6PYB3_ACTCH; Transcription factor
STRINGXP_006449140.12e-82(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-27DNA-binding storekeeper protein-related transcriptional regulator