PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn082221

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

AP2

Protein Properties

Length: 375aa MW: 41070.8 Da PI: 4.8914

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn082221	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23	2e-07	145	166	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + Achn082221 145 SQYRGVTFYRRTGRWESHIWAY 166 78*****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.94E-5	145	184	IPR016177	DNA-binding domain
SMART	SM00380	4.7E-8	146	189	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MLDLNLSFAR DEEYVSITEK FPEGSGGGAM DESGTSNSSI VNAEDDDSCS TRTSSGEIFA 60 FNFDILKVGG EFNNTTSDEN RMTRSEFVTR QLFPATESSS AASLFRPNWV DLSFDQASPS 120 GVQEVRVVQQ QQGKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWAYDKAA IKCNGREAVT 180 NFEPSEYEGE MISEVNDGAP CSSLWAYVVF NALNAGSVHN LDLNLGISIP SSGDGTKDNE 240 SSGRFQFHPY DVHDMENPTS TIAGKQSLKE LTMTSDHPPL WTGAYPNFFP NYEERARTQG 300 NEGGSSQGSP NWLWKMHTAA SSGFSSAPTT AFSASLHPSK FPNSTTLNLG FSPSPAAITN 360 SQYHYQMSPL QPPP*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MLDLNLSFAR DEEYVSITEK FPEGSGGGAM DESGTSNSSI VNAEDDDSCS TRTSSGEIFA  60
FNFDILKVGG EFNNTTSDEN RMTRSEFVTR QLFPATESSS AASLFRPNWV DLSFDQASPS  120
GVQEVRVVQQ QQGKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWAYDKAA IKCNGREAVT  180
NFEPSEYEGE MISEVNDGAP CSSLWAYVVF NALNAGSVHN LDLNLGISIP SSGDGTKDNE  240
SSGRFQFHPY DVHDMENPTS TIAGKQSLKE LTMTSDHPPL WTGAYPNFFP NYEERARTQG  300
NEGGSSQGSP NWLWKMHTAA SSGFSSAPTT AFSASLHPSK FPNSTTLNLG FSPSPAAITN  360
SQYHYQMSPL QPPP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269\|PubMed:14555699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269\|PubMed:14555699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028061878.1	2e-79	ethylene-responsive transcription factor RAP2-7-like
Swissprot	Q9LVG2	2e-24	TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBL	A0A2R6PQW0	1e-132	A0A2R6PQW0_ACTCH; Ethylene-responsive transcription factor RAP2-7 like
STRING	VIT_06s0004g03590.t01	4e-55	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	2e-22	related to AP2.7