PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn080541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41740.2 Da PI: 5.3564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.8 | 1.2e-24 | 21 | 93 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e +wyfF++r++ky++g r+nr+t++gyWka +dk+++ +++ vg k +L fy+g + g+kt+W mhey++ Achn080541 21 ELHWYFFTPRERKYRNGIRPNRVTSDGYWKAMTSDKPIMY-ENNIVGYKMSLNFYEGGPRYGKKTEWKMHEYKI 93 569*************************************.9999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.902 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-31 | 15 | 117 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-12 | 17 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTNILPYCVT KYSGMYPLLG ELHWYFFTPR ERKYRNGIRP NRVTSDGYWK AMTSDKPIMY 60 ENNIVGYKMS LNFYEGGPRY GKKTEWKMHE YKILPTRKSN AADSMKLDDL VLCKIYSTSK 120 KAKDVQENKR TELAAENANQ DSLPLGVSNG MNMGSGMSFP ELSGVQVQNL SLLSSGDNDQ 180 LYDLTYLNGL INGSCHENFS SSLGAHMMHI DDHHMPLVGP SMSFSELSGV KFSNPSLPSG 240 DNDQLDNLMY LEGAINGISH DNCPSSLGAH MMNIVSIYKF ANEILCKSEE RSSPNLLPHN 300 SKRHLFMLES VDDHTSPLAD PSMSFPELSE VQIQNPSLLS CCDNDQLMID LIYLEGIIND 360 SSHDNCPSSV VPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 18 | 123 | 67 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 18 | 123 | 67 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 18 | 123 | 67 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 18 | 123 | 67 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 18 | 123 | 70 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 18 | 123 | 67 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 18 | 123 | 67 | 170 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-31 | NAC-like, activated by AP3/PI |