PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn080541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 374aa    MW: 41740.2 Da    PI: 5.3564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn080541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-24219355128
         NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 e +wyfF++r++ky++g r+nr+t++gyWka  +dk+++  +++ vg k +L fy+g  + g+kt+W mhey++
  Achn080541  21 ELHWYFFTPRERKYRNGIRPNRVTSDGYWKAMTSDKPIMY-ENNIVGYKMSLNFYEGGPRYGKKTEWKMHEYKI 93 
                 569*************************************.9999***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.9021118IPR003441NAC domain
SuperFamilySSF1019413.14E-3115117IPR003441NAC domain
PfamPF023655.9E-121793IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTNILPYCVT KYSGMYPLLG ELHWYFFTPR ERKYRNGIRP NRVTSDGYWK AMTSDKPIMY  60
ENNIVGYKMS LNFYEGGPRY GKKTEWKMHE YKILPTRKSN AADSMKLDDL VLCKIYSTSK  120
KAKDVQENKR TELAAENANQ DSLPLGVSNG MNMGSGMSFP ELSGVQVQNL SLLSSGDNDQ  180
LYDLTYLNGL INGSCHENFS SSLGAHMMHI DDHHMPLVGP SMSFSELSGV KFSNPSLPSG  240
DNDQLDNLMY LEGAINGISH DNCPSSLGAH MMNIVSIYKF ANEILCKSEE RSSPNLLPHN  300
SKRHLFMLES VDDHTSPLAD PSMSFPELSE VQIQNPSLLS CCDNDQLMID LIYLEGIIND  360
SSHDNCPSSV VPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-281812367170NO APICAL MERISTEM PROTEIN
1ut4_B3e-281812367170NO APICAL MERISTEM PROTEIN
1ut7_A3e-281812367170NO APICAL MERISTEM PROTEIN
1ut7_B3e-281812367170NO APICAL MERISTEM PROTEIN
3swm_A3e-281812370173NAC domain-containing protein 19
3swm_B3e-281812370173NAC domain-containing protein 19
3swm_C3e-281812370173NAC domain-containing protein 19
3swm_D3e-281812370173NAC domain-containing protein 19
3swp_A3e-281812370173NAC domain-containing protein 19
3swp_B3e-281812370173NAC domain-containing protein 19
3swp_C3e-281812370173NAC domain-containing protein 19
3swp_D3e-281812370173NAC domain-containing protein 19
4dul_A3e-281812367170NAC domain-containing protein 19
4dul_B3e-281812367170NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-31NAC-like, activated by AP3/PI