PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn080531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 321aa    MW: 36420.3 Da    PI: 7.8068
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn080531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.6e-42221492128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkg 97 
                 ppG+rF Ptd elvv+yL +kv++k+l+  ++i  ++iy+++P++L  k+ + ++ +wyfF++r++k+++g r+nr  at++gyWkat +dk+v+  ++
  Achn080531  22 PPGYRFVPTDTELVVHYLYNKVSHKPLPG-NMIIAINIYDFHPQQLALKYPSlGKIHWYFFTPRERKHPNGVRPNRaiATRDGYWKATTSDKPVMY-EN 118
                 9***************************9.8899************9555552556********************76699***************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 + vg k tL fy+g  ++g+kt+W mhey++
  Achn080531 119 NIVGYKMTLDFYEGGPRDGKKTEWKMHEYKI 149
                 99***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-4920173IPR003441NAC domain
PROSITE profilePS5100546.83721174IPR003441NAC domain
PfamPF023654.9E-2422149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDKGKSIINE VEGDDERERD IPPGYRFVPT DTELVVHYLY NKVSHKPLPG NMIIAINIYD  60
FHPQQLALKY PSLGKIHWYF FTPRERKHPN GVRPNRAIAT RDGYWKATTS DKPVMYENNI  120
VGYKMTLDFY EGGPRDGKKT EWKMHEYKIL PTRKSNAADS MKLDDLVLCK IYPTSKKAKD  180
VQENKRTELA AENANQDSRP LGVSNGMNMG LSMRFPELSG VQIQNPSLLS GGDNDRLYDL  240
AYLNGLINGS SHNFPSSLGS HMMHTVSVFE LTNETLCKSQ KQSSPNLLPH NSEWHRFMLE  300
PADDHMSPLV DLSTSSFRVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-41121726166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-49NAC-like, activated by AP3/PI