PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn079241

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 333aa MW: 38643.9 Da PI: 9.1935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn079241	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	59	187	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kge 98 GfrFhPtdeelv +yL++kve+++l++e+ ik+vdiyk++PwdLpk+ + ++kewyfF+kr +ky+++ r++r+t sg+Wkatg d++++s+ ++e Achn079241 59 GGFRFHPTDEELVGFYLRRKVEKRTLSIEQLIKQVDIYKYDPWDLPKASTVGDKEWYFFCKRGRKYRNSIRPKRVTGSGFWKATGIDRPIHSTggeDRE 157 59************************999***********888889************************************9655555 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+kt+W+mhe+rl Achn079241 158 CIGLKKSLVYYRGNAGKGTKTEWMMHEFRL 187 6*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-53	50	219	IPR003441	NAC domain
PROSITE profile	PS51005	52.527	57	219	IPR003441	NAC domain
Pfam	PF02365	5.6E-25	60	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MANKIKEALF ITSQKQFLKD FGDDYCYPNA PKNIDETRAT EFMRLDEAAK IMKKAYFSGG 60 FRFHPTDEEL VGFYLRRKVE KRTLSIEQLI KQVDIYKYDP WDLPKASTVG DKEWYFFCKR 120 GRKYRNSIRP KRVTGSGFWK ATGIDRPIHS TGGEDRECIG LKKSLVYYRG NAGKGTKTEW 180 MMHEFRLPTN HDDKSTKHVD VKNITQEAEV WTICRILKRN TSYKNCIPDW KALSAKKNKP 240 IVDASSKTCS VEFDGTESYI EFRSSEVPVI RQNHEKKHFG NHFGEMNQTM SQAPFVASYS 300 SFCSPDTNEL IKYGDWDELR SVVEFAFDPF HV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-45	60	222	23	171	NAC domain-containing protein 19
3swm_B	1e-45	60	222	23	171	NAC domain-containing protein 19
3swm_C	1e-45	60	222	23	171	NAC domain-containing protein 19
3swm_D	1e-45	60	222	23	171	NAC domain-containing protein 19
3swp_A	1e-45	60	222	23	171	NAC domain-containing protein 19
3swp_B	1e-45	60	222	23	171	NAC domain-containing protein 19
3swp_C	1e-45	60	222	23	171	NAC domain-containing protein 19
3swp_D	1e-45	60	222	23	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115341.1	1e-149	LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2R6QTD2	0.0	A0A2R6QTD2_ACTCH; Transcription factor JUNGBRUNNEN 1 like
STRING	XP_009778771.1	1e-122	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-87	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]