PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn078441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 1425aa    MW: 162097 Da    PI: 8.2877
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn078441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.74.5e-19692777190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 ++Y++YAk  GF   +++skk+ ++g     t+ C ++gk++++  +     +++++++++Cka+++++++ dgkw+++++el+HnHel 
  Achn078441 692 EYYSTYAKAKGFGSIVKASKKR-DDGVKAYITYACHRSGKPRTTALN---PVKSHPTSKVDCKAHMNISLQVDGKWMLNSIELNHNHELD 777
                 69**********9999987775.8999999*************9988...9999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.1E-50189503IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.27E-52193503IPR017986WD40-repeat-containing domain
SMARTSM003201.8E-5202241IPR001680WD40 repeat
PfamPF004000.0024209241IPR001680WD40 repeat
PROSITE profilePS5029410.786209250IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.31209250IPR001680WD40 repeat
CDDcd002001.00E-39209504No hitNo description
SMARTSM003200.0011280320IPR001680WD40 repeat
PROSITE profilePS5008212.079287329IPR001680WD40 repeat
PfamPF004000.017287320IPR001680WD40 repeat
PROSITE profilePS5029424.257287423IPR017986WD40-repeat-containing domain
PROSITE patternPS006780307321IPR019775WD40 repeat, conserved site
SMARTSM003202.6324368IPR001680WD40 repeat
PfamPF004000.14342368IPR001680WD40 repeat
PROSITE patternPS006780355369IPR019775WD40 repeat, conserved site
SMARTSM003208.9E-6375414IPR001680WD40 repeat
PfamPF004001.3E-4380414IPR001680WD40 repeat
PROSITE profilePS5008215.154382423IPR001680WD40 repeat
SMARTSM00320180469513IPR001680WD40 repeat
PfamPF031013.2E-16692778IPR004330FAR1 DNA binding domain
PfamPF105511.4E-34898992IPR018289MULE transposase domain
PROSITE profilePS509669.91611841222IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1425 aa     Download sequence    Send to blast
MHISPTCWPS SQHIEEVCSP TGPTVPLPLT SGGLWRQIEA YKTPVNQNQN QRVIVTTNRK  60
IAIEAHQSIK NGGRRRDIRR RQSTLPSNLR SKGFPSLSSS SKAWLDSLKN PKPSSRNRSD  120
PNPSLPNDDA MVGPPRPMRM DNDDEEEEDR LIEPPRPAAV DEEDDDDGEM IGPPPPPPVS  180
GLEDSEEEEK SDGEEEGRYR IPLSNEIALK GHTKVVSALA IDHSGSRVLS GSYDYTVRMF  240
DFQGMNARLQ SFRQLEPFEG HQVRNLSWSP TADRFLCVTG SAQAKNTKGH ISGLTCGEWH  300
PKTKEKILTS SEDGSLRIWD VNDFKSQKQV IKPKLARPGR VPVTTCAWDR EGKSIAGGIG  360
DGSIQIWNLK PGWGSRPDIH VEKGHSDDIT ALKFSSDGQI LLSRSFDDSL KVWDLRKMKE  420
PLRVFENLPN HYAQTNIAFS PDEQLFLTGT SVEKDSTTGG LLCFYDREKL ELVSRVGISP  480
TCSVIQCAWH PKLNQIFATS GDKSQGGTHI LYDPTLSERG ALVCVARAPR NKSIDDYEAK  540
PVIHNPHALP LFRDQPSRKR QREKVLKDPL KSHKPELPIT GPGHGGRVGS TKGSLLTQYL  600
LKQGGLIKET WMEEDPREAI LKYADAAAKD PKFIAPAYAQ TQPEPVFAKS DSEDEEKIME  660
KEDIDLEENM NVEAVLEPKV GTIFNSKNEA KEYYSTYAKA KGFGSIVKAS KKRDDGVKAY  720
ITYACHRSGK PRTTALNPVK SHPTSKVDCK AHMNISLQVD GKWMLNSIEL NHNHELDPEK  780
AKYLKCYRTL PPHSQRAIEL SIDVGIKLTP FIRACVIGEG APDNVTWTEK DARNHKDKVR  840
RSELKEGDAK AMHKYFVRIQ EDNGNFFYAI DVDKDHRLIN AFWADTRSRE LYQEFGDVVT  900
FDTTYLVNKF DMPFAPFVGV NHHGQSILFG CGLVTREDTT SFVWLFKTWL SCMLGSYPNA  960
IITDQCRAMQ NAIIQVFPNT RHHWCLWHIM KKVPDKLKGY KEYKSIRRSI KSVVYDSLSA  1020
EEFEQSWENL IKQFDLQNNG WLAGLYGERH RWVPAFVKDT FWAGMSTTQR SESMNAFFDG  1080
YVHSNTSLKE FVEQYDNALR KKVQQEEEAD TRSLNVQIQN VSPYEYENQF QQAYTVKKCK  1140
QFREQVAATI GCSLTVGPVV NGISQFHIEQ DILVGKKHKL FKTFTFLVHF NEESTETNCN  1200
CRLFESKGMV CAHMIKVWSK KKLQVVLDKY ILRRWRKNLV RSYTKIKVSY VKWERKPEFV  1260
RYDSLEKLFN EGADKVIYSA AKTNRMAARL REIIVENELD VENYPSNMPT VGYAQFDLES  1320
FLDNSNIVGD PSKGPRRGRP HVEVRTHATG FDEIITQESG TVTKSEVRDK NLERDEVDHW  1380
WSMMVAMVLG RERKEKQQNS ELGLRLTKKI KLGLRNYVYA DPFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6f3t_A2e-15209456347586Transcription initiation factor TFIID subunit 5
6f3t_B2e-15209456347586Transcription initiation factor TFIID subunit 5
6f3t_C2e-15209456347586Transcription initiation factor TFIID subunit 5
6f3t_D2e-15209456347586Transcription initiation factor TFIID subunit 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-112FAR1 family protein