PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn078441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 1425aa MW: 162097 Da PI: 8.2877 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.7 | 4.5e-19 | 692 | 777 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YAk GF +++skk+ ++g t+ C ++gk++++ + +++++++++Cka+++++++ dgkw+++++el+HnHel Achn078441 692 EYYSTYAKAKGFGSIVKASKKR-DDGVKAYITYACHRSGKPRTTALN---PVKSHPTSKVDCKAHMNISLQVDGKWMLNSIELNHNHELD 777 69**********9999987775.8999999*************9988...9999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.130.10.10 | 1.1E-50 | 189 | 503 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 1.27E-52 | 193 | 503 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 1.8E-5 | 202 | 241 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0024 | 209 | 241 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 10.786 | 209 | 250 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 11.31 | 209 | 250 | IPR001680 | WD40 repeat |
CDD | cd00200 | 1.00E-39 | 209 | 504 | No hit | No description |
SMART | SM00320 | 0.0011 | 280 | 320 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.079 | 287 | 329 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.017 | 287 | 320 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 24.257 | 287 | 423 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 307 | 321 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 2.6 | 324 | 368 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.14 | 342 | 368 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 355 | 369 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 8.9E-6 | 375 | 414 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 1.3E-4 | 380 | 414 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 15.154 | 382 | 423 | IPR001680 | WD40 repeat |
SMART | SM00320 | 180 | 469 | 513 | IPR001680 | WD40 repeat |
Pfam | PF03101 | 3.2E-16 | 692 | 778 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-34 | 898 | 992 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 1184 | 1222 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1425 aa Download sequence Send to blast |
MHISPTCWPS SQHIEEVCSP TGPTVPLPLT SGGLWRQIEA YKTPVNQNQN QRVIVTTNRK 60 IAIEAHQSIK NGGRRRDIRR RQSTLPSNLR SKGFPSLSSS SKAWLDSLKN PKPSSRNRSD 120 PNPSLPNDDA MVGPPRPMRM DNDDEEEEDR LIEPPRPAAV DEEDDDDGEM IGPPPPPPVS 180 GLEDSEEEEK SDGEEEGRYR IPLSNEIALK GHTKVVSALA IDHSGSRVLS GSYDYTVRMF 240 DFQGMNARLQ SFRQLEPFEG HQVRNLSWSP TADRFLCVTG SAQAKNTKGH ISGLTCGEWH 300 PKTKEKILTS SEDGSLRIWD VNDFKSQKQV IKPKLARPGR VPVTTCAWDR EGKSIAGGIG 360 DGSIQIWNLK PGWGSRPDIH VEKGHSDDIT ALKFSSDGQI LLSRSFDDSL KVWDLRKMKE 420 PLRVFENLPN HYAQTNIAFS PDEQLFLTGT SVEKDSTTGG LLCFYDREKL ELVSRVGISP 480 TCSVIQCAWH PKLNQIFATS GDKSQGGTHI LYDPTLSERG ALVCVARAPR NKSIDDYEAK 540 PVIHNPHALP LFRDQPSRKR QREKVLKDPL KSHKPELPIT GPGHGGRVGS TKGSLLTQYL 600 LKQGGLIKET WMEEDPREAI LKYADAAAKD PKFIAPAYAQ TQPEPVFAKS DSEDEEKIME 660 KEDIDLEENM NVEAVLEPKV GTIFNSKNEA KEYYSTYAKA KGFGSIVKAS KKRDDGVKAY 720 ITYACHRSGK PRTTALNPVK SHPTSKVDCK AHMNISLQVD GKWMLNSIEL NHNHELDPEK 780 AKYLKCYRTL PPHSQRAIEL SIDVGIKLTP FIRACVIGEG APDNVTWTEK DARNHKDKVR 840 RSELKEGDAK AMHKYFVRIQ EDNGNFFYAI DVDKDHRLIN AFWADTRSRE LYQEFGDVVT 900 FDTTYLVNKF DMPFAPFVGV NHHGQSILFG CGLVTREDTT SFVWLFKTWL SCMLGSYPNA 960 IITDQCRAMQ NAIIQVFPNT RHHWCLWHIM KKVPDKLKGY KEYKSIRRSI KSVVYDSLSA 1020 EEFEQSWENL IKQFDLQNNG WLAGLYGERH RWVPAFVKDT FWAGMSTTQR SESMNAFFDG 1080 YVHSNTSLKE FVEQYDNALR KKVQQEEEAD TRSLNVQIQN VSPYEYENQF QQAYTVKKCK 1140 QFREQVAATI GCSLTVGPVV NGISQFHIEQ DILVGKKHKL FKTFTFLVHF NEESTETNCN 1200 CRLFESKGMV CAHMIKVWSK KKLQVVLDKY ILRRWRKNLV RSYTKIKVSY VKWERKPEFV 1260 RYDSLEKLFN EGADKVIYSA AKTNRMAARL REIIVENELD VENYPSNMPT VGYAQFDLES 1320 FLDNSNIVGD PSKGPRRGRP HVEVRTHATG FDEIITQESG TVTKSEVRDK NLERDEVDHW 1380 WSMMVAMVLG RERKEKQQNS ELGLRLTKKI KLGLRNYVYA DPFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6f3t_A | 2e-15 | 209 | 456 | 347 | 586 | Transcription initiation factor TFIID subunit 5 |
6f3t_B | 2e-15 | 209 | 456 | 347 | 586 | Transcription initiation factor TFIID subunit 5 |
6f3t_C | 2e-15 | 209 | 456 | 347 | 586 | Transcription initiation factor TFIID subunit 5 |
6f3t_D | 2e-15 | 209 | 456 | 347 | 586 | Transcription initiation factor TFIID subunit 5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-112 | FAR1 family protein |