PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn078261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 20381.4 Da PI: 4.66 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 20 | 43 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W+ Ia++++ gRt++++k+ w+++l Achn078261 20 WSVIAAKLP-GRTDNEIKNVWHTHL 43 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.12E-7 | 19 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.098 | 20 | 43 | IPR017877 | Myb-like domain |
CDD | cd00167 | 8.89E-5 | 20 | 43 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 20 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAASQSSQSY RNSSSSMVAW SVIAAKLPGR TDNEIKNVWH THLKKRVLKQ NHQATSTLET 60 KPQNYVKSEP LNYPIQVSPQ SPQHSSSTTT NSETTATTST NNDALNDFPE VDKDFWESVF 120 LANDSGETTN FPAGGGETQM EFQFSPLHGV EQVGGCNPGL RDCMDFWYNI FTTAGELPEL 180 PELF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109725.1 | 1e-43 | transcription factor MYB14-like | ||||
TrEMBL | A0A2R6PF72 | 1e-119 | A0A2R6PF72_ACTCH; Myb-related protein like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17373 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-13 | myb domain protein 14 |