PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn077531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32968.8 Da PI: 9.7642 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.9 | 6.1e-34 | 2 | 76 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+ rdk+y+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Achn077531 2 GEKEWYFFCVRDKNYPTGLRTNRATAAGYWKATGKDKEIFH-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 76 578**************************************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.51 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-37 | 2 | 100 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-16 | 6 | 75 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGEKEWYFFC VRDKNYPTGL RTNRATAAGY WKATGKDKEI FHGKSLVGMK KTLVFYKGRA 60 PKGEKTNWVM HEYRLEGKFF LQILPKTAKN ECVICRVFQK TSGGKKIHIS GLVRLNSVGN 120 ELGPILPPLT NSSPFRPNPL TSESVHVSCF SNSIDIPKTQ QEMIEYMNNP LFGGGASSIP 180 TDIFPRISIP NPFYPAQGAQ IQGSLPYPGP FLMQDQAILR GLLENYGPNT KQIPKTEKER 240 VSASQETGLS NDMNTEISSV MSNLEMRRRR FEDQIQGAPS TSAGPMDLGY IWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-30 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-30 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-30 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-30 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-30 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-30 | 1 | 106 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-30 | 1 | 106 | 68 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028056118.1 | 1e-163 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-103 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6PE41 | 0.0 | A0A2R6PE41_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_010528m | 1e-143 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-106 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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