PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn075641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 303aa    MW: 33154.9 Da    PI: 7.7216
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn075641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.58e-18224257134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+C + kTp+WR gp g ktLCnaCG+++++ +
  Achn075641 224 CSHCLVQKTPQWRAGPLGAKTLCNACGVRFKSGR 257
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-8211300IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.187218254IPR000679Zinc finger, GATA-type
SMARTSM004018.3E-14218272IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14220282No hitNo description
Gene3DG3DSA:3.30.50.108.6E-14222255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-12223280No hitNo description
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15224257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDYVEAALKP SFEPPKKAQS QPQAFSVDSP AVNGVSGDDF FVDDLLDFSK EGTEEGFLGI  60
KEEEDQEPDN TTKSCSVSIS LQEQKQSNKT SFDFGCSELS VPAEDAASLE WLSHFVEDSF  120
SNYSVPFPAG KSLENPVEHQ SEPVKAKLCF VTPVQTKARS KRSRTGFRVW SLSSTSESST  180
SSSSTTSSSP DSLLRPPIPP TEAKKQKRRK RETGGGGAQQ PRRCSHCLVQ KTPQWRAGPL  240
GAKTLCNACG VRFKSGRLFP EYRPACSPTF LSDVHSNNHR KVMEMSRKKE SELGSGQPVQ  300
SF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061383.11e-103GATA transcription factor 5-like
SwissprotQ9FH572e-65GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2R6S2Q20.0A0A2R6S2Q2_ACTCH; GATA transcription factor
STRINGXP_009761911.17e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-63GATA transcription factor 5