PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn075361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 511aa MW: 58497 Da PI: 6.5952 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.6 | 4.1e-29 | 101 | 186 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Achn075361 101 RWPRQETLTLLEIRSSLDCKFKEANQKGPLWDEVSRIMcDEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 186 8***********************************998*******************************98..55667*******85 PP | |||||||
2 | trihelix | 62.6 | 8.9e-20 | 377 | 452 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W+++e+ +Lie+r +me+r+++ g +++ lWee+++km g+ers +Ck+kwe +n++ ++ k+ e++ + s+c Achn075361 377 WPESEITKLIELRASMETRFEQgGGSEEVLWEEIGAKMGCLGYERSGLMCKDKWERINNYLRNKKRKENSV---RGSNC 452 *********************945799************************************99999985...23344 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.5 | 98 | 161 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.888 | 100 | 159 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.87E-19 | 101 | 166 | No hit | No description |
Pfam | PF13837 | 4.6E-20 | 101 | 187 | No hit | No description |
SMART | SM00717 | 8.5E-4 | 373 | 436 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.551 | 376 | 434 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.1E-12 | 376 | 455 | No hit | No description |
CDD | cd12203 | 2.30E-21 | 377 | 441 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 511 aa Download sequence Send to blast |
MDVGKKDMDD QYGIADLRQY MNGRTNFPGI APPGDLFSGQ RNLSPYEMVM AAGADVAPRG 60 LMHYEFRSDG AAAASSGSLN NGLEVEGGCG GGGGGDGWTG RWPRQETLTL LEIRSSLDCK 120 FKEANQKGPL WDEVSRIMCD EHGYQRSGKK CREKFENLYK YYKKTKEGKA GRQDGKHYRF 180 FRQLEALYGD SNIHQASASE THLIGNNFQF HNSSNSYAQR SNTECFQAPK LSDNSLSISH 240 SSELETSSSD DHDDTVKKKG RGRRSWKSKI RDFIDLQMRK LMKKQEEWME KMIKTLERTE 300 QEREMREEEW RKREAERVER EHKFWASERA WIEARDAALF EALHKLTEKD QAMKGSEPQR 360 IENGSEILSN AWRGESWPES EITKLIELRA SMETRFEQGG GSEEVLWEEI GAKMGCLGYE 420 RSGLMCKDKW ERINNYLRNK KRKENSVRGS NCYFENNESA VGYNHGDAAA YCEIMNEQRA 480 SESCFRFLGG GDGENMWENY GFKLSKGENR * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022743398.1 | 0.0 | trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-123 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A2R6QW39 | 0.0 | A0A2R6QW39_ACTCH; Trihelix transcription factor PTL like | ||||
STRING | VIT_08s0007g03820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03680.1 | 7e-96 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|