PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn074571

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 267aa MW: 29657.7 Da PI: 8.4061

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn074571	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.5	5.7e-32	43	99	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eClkNhAas+Gg+a DGCgEfmp+ geegt +al+C+AC+CHRnFHR+e e Achn074571 43 KMVRYRECLKNHAASMGGNARDGCGEFMPN-GEEGTLEALTCSACNCHRNFHRKEIEG 99 679************************8.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-24	45	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.2E-29	45	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-30	46	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.067	47	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.35E-18	184	256	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-29	191	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-25	195	251	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MIHHGPAPVP HNHIIVPNLA PQVPSNGSTP TALDLEDHVP YKKMVRYREC LKNHAASMGG 60 NARDGCGEFM PNGEEGTLEA LTCSACNCHR NFHRKEIEGE PSSCECFQTA PNRVIERKWI 120 MGQAYHKNVL GPDQALGPIG YYPSGGALIR SRPPPAAAAH HQMMMSYNVG SFGSESDELE 180 AGDGGGARPP QLVVKKRFRT KFSQDQKEKM LNFAERVGWK FQKQEEDVVQ QFCQEIGVKR 240 RVLKVWMHNN KFNLAKENTS IAQNPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-22	196	251	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003633412.1	1e-119	PREDICTED: zinc-finger homeodomain protein 4
Swissprot	O64722	5e-67	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A2R6RGG6	0.0	A0A2R6RGG6_ACTCH; Zinc-finger homeodomain protein
STRING	VIT_12s0035g01880.t01	1e-118	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5154	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-69	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]