PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn074521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 398aa    MW: 45361.4 Da    PI: 7.4961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn074521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.4e-50291542128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ v s++ + +
  Achn074521  29 MPGFRFHPTEEELIEFYLRRKVEGKRFTV-ELITFLDLYRFDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMVRSENFRSI 126
                 79*************************99.89***************888889********************************************** PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg +t+W+m+eyrl
  Achn074521 127 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 154
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5627175IPR003441NAC domain
PROSITE profilePS5100555.96628175IPR003441NAC domain
PfamPF023657.3E-2530154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSSQDHESNK HDNRDHDDDD DKHEHDVVMP GFRFHPTEEE LIEFYLRRKV EGKRFTVELI  60
TFLDLYRFDP WELPAMAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK ATGADRMVRS  120
ENFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPQQETE RLQKAETSLC RVYKRPGVED  180
HPSLPRSLPT RASSSRATQI NRSQAQAIGG HSTQSQVDEV EKMSEASASS STDVGTSLGL  240
SKPNLYNIGS NLHRISNKSP RISDIQDPTE YEQILSSFSA SRLASTSALA PPPQCCPSLV  300
PNSSSPNTTT AFTGSTTTLV PSQNYIPVDD LHRLINLQQA SFNHHHHQQQ QYFQNHLYQY  360
SSQLSILQPQ SVSLPINMVW DWNSINEGNK EFTTSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-563017519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-563017519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-563017519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-563017519165NO APICAL MERISTEM PROTEIN
4dul_A4e-563017519165NAC domain-containing protein 19
4dul_B4e-563017519165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106559.11e-154NAC domain-containing protein 35-like isoform X1
RefseqXP_028106561.11e-154NAC domain-containing protein 35-like isoform X2
TrEMBLA0A2R6RGD50.0A0A2R6RGD5_ACTCH; NAC domain-containing protein
STRINGcassava4.1_009166m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-111NAC domain containing protein 35