PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn074521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 45361.4 Da PI: 7.4961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.4e-50 | 29 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ v s++ + + Achn074521 29 MPGFRFHPTEEELIEFYLRRKVEGKRFTV-ELITFLDLYRFDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMVRSENFRSI 126 79*************************99.89***************888889********************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg +t+W+m+eyrl Achn074521 127 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 154 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-56 | 27 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.966 | 28 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-25 | 30 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MSSQDHESNK HDNRDHDDDD DKHEHDVVMP GFRFHPTEEE LIEFYLRRKV EGKRFTVELI 60 TFLDLYRFDP WELPAMAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK ATGADRMVRS 120 ENFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPQQETE RLQKAETSLC RVYKRPGVED 180 HPSLPRSLPT RASSSRATQI NRSQAQAIGG HSTQSQVDEV EKMSEASASS STDVGTSLGL 240 SKPNLYNIGS NLHRISNKSP RISDIQDPTE YEQILSSFSA SRLASTSALA PPPQCCPSLV 300 PNSSSPNTTT AFTGSTTTLV PSQNYIPVDD LHRLINLQQA SFNHHHHQQQ QYFQNHLYQY 360 SSQLSILQPQ SVSLPINMVW DWNSINEGNK EFTTSFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-56 | 30 | 175 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 30 | 175 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028106559.1 | 1e-154 | NAC domain-containing protein 35-like isoform X1 | ||||
Refseq | XP_028106561.1 | 1e-154 | NAC domain-containing protein 35-like isoform X2 | ||||
TrEMBL | A0A2R6RGD5 | 0.0 | A0A2R6RGD5_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_009166m | 1e-148 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-111 | NAC domain containing protein 35 |