PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn071731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 544aa    MW: 61632.2 Da    PI: 5.9186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn071731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.5e-073583911755
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 N++f  Lr+++P+ +      K++Ka+iL  ++eY+k+L+
  Achn071731 358 NERFLVLRSMVPSiN------KVDKASILGDTIEYLKELE 391
                 99***********77......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-1325138IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.731341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-5351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-7354395No hitNo description
PfamPF000102.6E-4358391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-10358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-10358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MTMICHLFTC TKVGRYNAYK HTFFTVLEWG DGCYNGDIKT RKTVQAMELK ADKMGLQRSE  60
QLRELYKCLL EGETDQQATI PTAALSPDDL TDAECLPGRA LANCQPIWLC NAHSADSKVF  120
SRSLLAKVAE DPSLIQHIKT SLLEFSKPVC SEISSSAPHN KDDDADFMYV KVDYEVDIDG  180
NIQDDFTMGS PYDCSNGCEH NLQTDDSFLV NGGASQVQSW HFMDDDFSNC VQDSMNSSDC  240
IYQTVLNQET YGFSPPKGAN MSLKEFKECN NTKFSSLDLG HNDVLHYKRT LSAVLMRNSH  300
RLLDNLCFRS CEYKSSFVSW KKGEIAKAHR PKLQQKMLKK ILFDAPLLHD FPDKRMENER  360
FLVLRSMVPS INKVDKASIL GDTIEYLKEL EGRVEELESC IDLAEQEAKG TRKYPDVVDK  420
TSENNENMRI DNKKPWINKR KAYDIDETDP KLSSVVPYDK PLKDMKVKIK EQEVLIEMRC  480
PSREYLLLDI IDALNHLNLD AHSVQSSTVD GILTVTLRYK FRGAVVASAR MIKQALSMIA  540
GKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094937.10.0transcription factor EGL1-like
RefseqXP_028094938.10.0transcription factor EGL1-like
RefseqXP_028094939.10.0transcription factor EGL1-like
TrEMBLA0A2R6Q8X50.0A0A2R6Q8X5_ACTCH; Transcription factor GLABRA like
STRINGVIT_15s0046g02560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-119bHLH family protein