PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn071481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 691aa    MW: 79505.4 Da    PI: 6.7826
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn071481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.14e-2569160190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 ++Y+++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke    + +w+++++++ HnHel 
  Achn071481  69 EYYSNFARKTGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgNTQWYISQFSNVHNHELL 160
                 69********************8888.******************************************99777899**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-2369160IPR004330FAR1 DNA binding domain
PfamPF105512.4E-22292385IPR018289MULE transposase domain
PROSITE profilePS509669.631566599IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-6571595IPR007527Zinc finger, SWIM-type
SMARTSM005756.0E-4574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MVTKSLNNIW IRRQQCPCGD WKCYIKYEGD DQTTIGSQLV KRETTSLSSS EVFTPYVGQI  60
FKSDDEAFEY YSNFARKTGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKLYLTKEIV DGNTQWYISQ FSNVHNHELL EDDQVRLLPA YRKLQEADQE  180
RILLLSKAGF PVNRIVKVLE IEKGVQPGQL PFIEKDVRNF IRTCKKTVQE NDALLTEKRE  240
NDMLDLLEAC KGKAGRDEGF VYNFTTGENG KIENIAWSYG DAIRAFAFFG DVVTFDTTYR  300
SITHSMLLGV WFGIDNHGKA IFLGCVLLQD ESAQSFSWAL QTFVNFMRGR RPQTIVTDID  360
SGLRDAIALQ LPNTKHVISI WHILSKVSSW FSLPLALQYE EFKSEFDVLC HLENIEDFEH  420
QWNHLVARFG LGSDKHIALL FSCRASWLFS YIRGYFLART LTPEYSKSVD AFFKSILSAQ  480
TSSLVLFEQV GTAANFGYQS QGELQYMPIK TCLPIEEHAR SIITPYAFSV LQHEIVLSMQ  540
YAAAEMANGS FIVRHYKKME RESLVFWMPE DEQVHCSCKE FEHSGILCRH SVRVLVLKNY  600
FEIPEKYFTL RWKLESSLVP VDHPITQCSN DECSQAFHSL TATLFSESLI SKERFSYVHR  660
ELTHLLENVR NMPANDEVTM NLAPNNVSES *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086935.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2R6QWF10.0A0A2R6QWF1_ACTCH; Protein FAR1-RELATED SEQUENCE 10
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]