PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn069791

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 473aa MW: 53833.5 Da PI: 7.6907

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn069791	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.8	1.8e-35	40	182	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgyW 83 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + +W Achn069791 40 LPAGVKFDPTDQELI-EHLEAKVEAKDskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKIQtecdlqggETRW 136 799**********.99***996665443333333666646******.555666799***************73334555544778 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Achn069791 137 HKTGKTRPVMM-NGKQKGCKKILVLYtnFGKNRKPEKTSWVMHQYHL 182 *********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-37	31	201	IPR003441	NAC domain
PROSITE profile	PS51005	32.578	40	201	IPR003441	NAC domain
Pfam	PF02365	4.7E-16	41	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MAIHHLFLTI QKVCHKREWL TIIRWDYFWG YKIFKDWVGL PAGVKFDPTD QELIEHLEAK 60 VEAKDSKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSKHFFHRPS KAYTTGTRKR 120 RKIQTECDLQ GGETRWHKTG KTRPVMMNGK QKGCKKILVL YTNFGKNRKP EKTSWVMHQY 180 HLGKHEEERE GELVVSKIFY QTQPRQCNWA ERGGAVATTG EGSGEASSRR ESGGSGSCSS 240 KEIVISTQRD EMSVIGYSAM DMQQLKAHDH FSFTPFRKSF DEVGVGEASS LREAHAQVAC 300 EARDIHEQHM THHVTTPHEH HQHPHHHQIG GATTAFHVSR PSHTISTIIA PPPPSLHHTS 360 IILDEASFHV PRILLPNDSF QTKHDNIDEY VLVFVSKKHN MYNVSMFWRQ QQQQQQQHHK 420 LGGRSGSGLE ELIMGCTSTD IKGESSIANP QEADWLKYST FWSDPGNQDH HG*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MAIHHLFLTI QKVCHKREWL TIIRWDYFWG YKIFKDWVGL PAGVKFDPTD QELIEHLEAK  60
VEAKDSKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSKHFFHRPS KAYTTGTRKR  120
RKIQTECDLQ GGETRWHKTG KTRPVMMNGK QKGCKKILVL YTNFGKNRKP EKTSWVMHQY  180
HLGKHEEERE GELVVSKIFY QTQPRQCNWA ERGGAVATTG EGSGEASSRR ESGGSGSCSS  240
KEIVISTQRD EMSVIGYSAM DMQQLKAHDH FSFTPFRKSF DEVGVGEASS LREAHAQVAC  300
EARDIHEQHM THHVTTPHEH HQHPHHHQIG GATTAFHVSR PSHTISTIIA PPPPSLHHTS  360
IILDEASFHV PRILLPNDSF QTKHDNIDEY VLVFVSKKHN MYNVSMFWRQ QQQQQQQHHK  420
LGGRSGSGLE ELIMGCTSTD IKGESSIANP QEADWLKYST FWSDPGNQDH HG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	38	182	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010656246.1	0.0	PREDICTED: NAC domain-containing protein 8 isoform X3
Swissprot	Q9M0F8	1e-157	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2R6QUY5	0.0	A0A2R6QUY5_ACTCH; NAC domain-containing protein (Fragment)
STRING	VIT_11s0016g02880.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-118	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]