PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 433aa    MW: 47651.9 Da    PI: 7.4282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064295317123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C+k Fs++  L  H ++H
  Achn069341 295 YKCSTCNKFFSTHQALGGHRSSH 317
                 9***************9999998 PP
2zf-C2H217.11.6e-05353375123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC++C+ksF++   L  H r+H
  Achn069341 353 YKCKICNKSFPTGQALGGHKRSH 375
                 9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-53764No hitNo description
PROSITE profilePS501579.9514071IPR007087Zinc finger, C2H2
PfamPF139122.4E-84062IPR007087Zinc finger, C2H2
SMARTSM003550.224062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SMARTSM003550.0384106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.09984111IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-985106No hitNo description
PfamPF139128.5E-786108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4281319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.21E-9290317No hitNo description
PfamPF139129.0E-8294319IPR007087Zinc finger, C2H2
SMARTSM003550.077295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907295322IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
SuperFamilySSF576673.62E-6350377No hitNo description
PfamPF139126.3E-14353377IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762353375IPR007087Zinc finger, C2H2
SMARTSM003550.0033353375IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001353375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280355375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDDDQENHKK LTLIKLKIQK YGEEEKVDPI IGHRSNDGPR VCNVCNKGFG SGKALGGHMR  60
VHAQVHKERS PNNDRSNGEE SDRTSCSICR KKFPSMKSLF GHMRCHPERE WRGIQPPAPA  120
AAITASSTLV SGHSDDLNGT IDLAKSLSSW PSTDRRGRQA LNCCHDSTTL SEVEEEERIR  180
EAVHDLMRLA RGESLHQVEA TNSNSPTNRA EIEEYFSVKK LKIDERGRGN ISGDTGRVVV  240
VKNLDRGKGK TDDGEEEGPN VDYNLGERVK IMSKKKRKKV KLINLESVST PTERYKCSTC  300
NKFFSTHQAL GGHRSSHNKI KNDEDEHNAN HALTLVDEVV PKEIIEGGGS SSYKCKICNK  360
SFPTGQALGG HKRSHWSGPV EGPASQTESP GEASETGRRI LGFDLNEVPP MDDEEVGGCG  420
YHDPSSSYNS AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274278KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052337.11e-113uncharacterized protein LOC114256854
TrEMBLA0A2R6PQB50.0A0A2R6PQB5_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-21C2H2 family protein