PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn069341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 47651.9 Da PI: 7.4282 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 295 | 317 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs++ L H ++H Achn069341 295 YKCSTCNKFFSTHQALGGHRSSH 317 9***************9999998 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.6e-05 | 353 | 375 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ksF++ L H r+H Achn069341 353 YKCKICNKSFPTGQALGGHKRSH 375 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-5 | 37 | 64 | No hit | No description |
PROSITE profile | PS50157 | 9.951 | 40 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.4E-8 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.21E-9 | 85 | 106 | No hit | No description |
Pfam | PF13912 | 8.5E-7 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.1E-4 | 281 | 319 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.21E-9 | 290 | 317 | No hit | No description |
Pfam | PF13912 | 9.0E-8 | 294 | 319 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.077 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 295 | 322 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 297 | 317 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.62E-6 | 350 | 377 | No hit | No description |
Pfam | PF13912 | 6.3E-14 | 353 | 377 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.762 | 353 | 375 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0033 | 353 | 375 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 353 | 375 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 355 | 375 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDDDQENHKK LTLIKLKIQK YGEEEKVDPI IGHRSNDGPR VCNVCNKGFG SGKALGGHMR 60 VHAQVHKERS PNNDRSNGEE SDRTSCSICR KKFPSMKSLF GHMRCHPERE WRGIQPPAPA 120 AAITASSTLV SGHSDDLNGT IDLAKSLSSW PSTDRRGRQA LNCCHDSTTL SEVEEEERIR 180 EAVHDLMRLA RGESLHQVEA TNSNSPTNRA EIEEYFSVKK LKIDERGRGN ISGDTGRVVV 240 VKNLDRGKGK TDDGEEEGPN VDYNLGERVK IMSKKKRKKV KLINLESVST PTERYKCSTC 300 NKFFSTHQAL GGHRSSHNKI KNDEDEHNAN HALTLVDEVV PKEIIEGGGS SSYKCKICNK 360 SFPTGQALGG HKRSHWSGPV EGPASQTESP GEASETGRRI LGFDLNEVPP MDDEEVGGCG 420 YHDPSSSYNS AS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 278 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028052337.1 | 1e-113 | uncharacterized protein LOC114256854 | ||||
TrEMBL | A0A2R6PQB5 | 0.0 | A0A2R6PQB5_ACTCH; Zinc finger protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-21 | C2H2 family protein |