PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 535aa    MW: 57978.3 Da    PI: 7.8287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.7e-11159183226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++ t tCk+Gd+CkF H+
  Achn069251 159 GEKDCAHYMLTRTCKFGDSCKFDHP 183
                 7889********************8 PP
2zf-CCCH34.63.1e-11210236127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++f++t  Ck+G rCkF+H++
  Achn069251 210 PGEPDCPYFLKTQRCKFGLRCKFNHPK 236
                 5789*********************96 PP
3zf-CCCH34.43.7e-11259283327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+ +tG Ck+G++CkF+H++
  Achn069251 259 EPPCAFYVKTGKCKFGATCKFHHPK 283
                 79*********************96 PP
4zf-CCCH38.52e-12337361327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+f+++tG CkyG++C+++H++
  Achn069251 337 EVDCPFYLKTGSCKYGATCRYNHPE 361
                 689********************96 PP
5zf-CCCH40.16.2e-13425447426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +C+++++tG+Ck+G++CkF+H+
  Achn069251 425 LECDYYMKTGECKFGENCKFHHP 447
                 58********************8 PP
6zf-CCCH39.68.4e-13481502627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+++++tGtCkyG++CkF H+p
  Achn069251 481 CPYYMKTGTCKYGATCKFDHPP 502
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507157185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5158184IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4163182IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587209237IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4215236IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61256284IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8259283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5261282IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925334362IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10337361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5338361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4340361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812421449IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6421448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6424449IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10426447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5427447IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666475503IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6475502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6479502IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10481502IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5481500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MANQLYGYNP SSGGRSIYGG GASNVYSSRS SVADIYLSAD SSLSRYLSAD RSSSLSDRGI  60
GSPMLFSQSD ALRFSSSSAR IPGIGVTQTS WPGVDIGAAS FDPLVSGIKR PSESLYHQTL  120
LGAHNEFGQS EAWFSSNPLT KRLRYESASN LPIYPQRPGE KDCAHYMLTR TCKFGDSCKF  180
DHPIWVPEGG IPDWKEVPLI ATSESLPERP GEPDCPYFLK TQRCKFGLRC KFNHPKDKMV  240
PLDSQENVGY STLPERPSEP PCAFYVKTGK CKFGATCKFH HPKDIQLPSA GQDNGSDAHI  300
ETAISNDGNT GELKLTQPLF TPALLNNSKG LPIRLGEVDC PFYLKTGSCK YGATCRYNHP  360
ERYGCAAINP PAAAIGPAIM APPAAHLNIG VVNPAVSILQ TIDPRLTQTT LGVASTIYPQ  420
RPGQLECDYY MKTGECKFGE NCKFHHPIDR SAATLSTREA QQQNVKLTLA GLPRREGAVH  480
CPYYMKTGTC KYGATCKFDH PPPGEVMAMA TSQGTSTSVG GEGNQNETVQ EQQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220GGRSIYGGG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818003e-69LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132553e-69LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079961.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2R6PQD60.0A0A2R6PQD6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010260864.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)