PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn069111

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 602aa MW: 68767.3 Da PI: 9.2645

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn069111	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	11	102	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA++vGFsvr+sk++k ++g+ ++r f+Cs+egkr ++k++ +k++r+r+etr gC a++k+k + ++++v+++ HnH ++ Achn069111 11 QFYNTYAYKVGFSVRRSKEHKD-KSGRLVDRIFCCSCEGKRGKDKRAgrIVKSHRPRPETRFGCLARMKIKYCReAKQYYVAEFAPVHNHMVC 102 6***************9998.7777************99998889999**************99899***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	11	102	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-31	224	318	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MKFLTEEAAY QFYNTYAYKV GFSVRRSKEH KDKSGRLVDR IFCCSCEGKR GKDKRAGRIV 60 KSHRPRPETR FGCLARMKIK YCREAKQYYV AEFAPVHNHM VCTPSKTHLH RSHRNFGVAQ 120 AAQADMANES GIAPSAIFEF MARQVGGRAG LGFIPQDYKN YLRSKRSVQM KVGDTCGVLE 180 YLQKMQLEDP NFFYAIQVDE DDLITNIFWA DAKMMADYAN FGDVVCFDTT YRKNKDGRPF 240 AMFVGVNHHK QTTIFGAALL YDETADSFMW LFDTFAKAIC GKTPKTILTD QDATMAKALV 300 ARWPGTVHRL CIWHIYQNAA TNLSGVFAKF KDFSKDFSEC IYDYEDEDDF IEAWNAMLVK 360 YNLQENDWLR RMFNMKEKWA LVYGRQTFCA DLTTTQRSES MNSALKRYAN YNNDLLRFFQ 420 NFQRWTKNAK SGSIESTCVS TPVEDPKVTM GTRYKELCCL CTQLATRAAE TNEAYKIALN 480 ALKKIAEEVD ASLIGKTFHG TPHANITASQ EINEATYGEG SQKKVKGLKV KKRTTKSSKR 540 PRSALERAIR SKKASVRSNL NSMKNPIQQK EIHHSSSISQ ALELESEESD FLAFEVEQNS 600 H*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MKFLTEEAAY QFYNTYAYKV GFSVRRSKEH KDKSGRLVDR IFCCSCEGKR GKDKRAGRIV  60
KSHRPRPETR FGCLARMKIK YCREAKQYYV AEFAPVHNHM VCTPSKTHLH RSHRNFGVAQ  120
AAQADMANES GIAPSAIFEF MARQVGGRAG LGFIPQDYKN YLRSKRSVQM KVGDTCGVLE  180
YLQKMQLEDP NFFYAIQVDE DDLITNIFWA DAKMMADYAN FGDVVCFDTT YRKNKDGRPF  240
AMFVGVNHHK QTTIFGAALL YDETADSFMW LFDTFAKAIC GKTPKTILTD QDATMAKALV  300
ARWPGTVHRL CIWHIYQNAA TNLSGVFAKF KDFSKDFSEC IYDYEDEDDF IEAWNAMLVK  360
YNLQENDWLR RMFNMKEKWA LVYGRQTFCA DLTTTQRSES MNSALKRYAN YNNDLLRFFQ  420
NFQRWTKNAK SGSIESTCVS TPVEDPKVTM GTRYKELCCL CTQLATRAAE TNEAYKIALN  480
ALKKIAEEVD ASLIGKTFHG TPHANITASQ EINEATYGEG SQKKVKGLKV KKRTTKSSKR  540
PRSALERAIR SKKASVRSNL NSMKNPIQQK EIHHSSSISQ ALELESEESD FLAFEVEQNS  600
H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	521	539	QKKVKGLKVKKRTTKSSKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652765.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6QX94	0.0	A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EMJ27983	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-97	FAR1-related sequence 5