PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn069111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 602aa MW: 68767.3 Da PI: 9.2645 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.7 | 1.9e-23 | 11 | 102 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA++vGFsvr+sk++k ++g+ ++r f+Cs+egkr ++k++ +k++r+r+etr gC a++k+k + ++++v+++ HnH ++ Achn069111 11 QFYNTYAYKVGFSVRRSKEHKD-KSGRLVDRIFCCSCEGKRGKDKRAgrIVKSHRPRPETRFGCLARMKIKYCReAKQYYVAEFAPVHNHMVC 102 6*****************9998.7777****************99998889999******************99899*************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-19 | 11 | 102 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.0E-31 | 224 | 318 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MKFLTEEAAY QFYNTYAYKV GFSVRRSKEH KDKSGRLVDR IFCCSCEGKR GKDKRAGRIV 60 KSHRPRPETR FGCLARMKIK YCREAKQYYV AEFAPVHNHM VCTPSKTHLH RSHRNFGVAQ 120 AAQADMANES GIAPSAIFEF MARQVGGRAG LGFIPQDYKN YLRSKRSVQM KVGDTCGVLE 180 YLQKMQLEDP NFFYAIQVDE DDLITNIFWA DAKMMADYAN FGDVVCFDTT YRKNKDGRPF 240 AMFVGVNHHK QTTIFGAALL YDETADSFMW LFDTFAKAIC GKTPKTILTD QDATMAKALV 300 ARWPGTVHRL CIWHIYQNAA TNLSGVFAKF KDFSKDFSEC IYDYEDEDDF IEAWNAMLVK 360 YNLQENDWLR RMFNMKEKWA LVYGRQTFCA DLTTTQRSES MNSALKRYAN YNNDLLRFFQ 420 NFQRWTKNAK SGSIESTCVS TPVEDPKVTM GTRYKELCCL CTQLATRAAE TNEAYKIALN 480 ALKKIAEEVD ASLIGKTFHG TPHANITASQ EINEATYGEG SQKKVKGLKV KKRTTKSSKR 540 PRSALERAIR SKKASVRSNL NSMKNPIQQK EIHHSSSISQ ALELESEESD FLAFEVEQNS 600 H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 521 | 539 | QKKVKGLKVKKRTTKSSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652765.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6QX94 | 0.0 | A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | EMJ27983 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-97 | FAR1-related sequence 5 |