PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn067851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 222aa    MW: 25028 Da    PI: 8.6348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn067851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-056284123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  Achn067851 62 YTCSFCKREFRSAQALGGHMNVH 84
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-65988No hitNo description
PfamPF139121.4E-66285IPR007087Zinc finger, C2H2
SMARTSM003550.00386284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.246289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MERNTLSSDL KYHGIGGRSM KDHININNNS SNHKLKDHSW EYSTSEREDL LSGLISWPPR  60
SYTCSFCKRE FRSAQALGGH MNVHRRDRAR LRDCSPPKDH GQYPFLNLNL NPNPNPNDPS  120
SSQPFSPSTK FPPFLAPSLS SLSSPSSTSP SEMRKWVMEP FWGERIKSSK TLFKLREFGG  180
FSEDGECEAV KRGEIVRLDL EIGLVSDSKE GLDLELRLGR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-145784229superman protein
2l1o_A6e-145784229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055222.12e-69transcriptional regulator SUPERMAN
TrEMBLA0A2R6RUS01e-160A0A2R6RUS0_ACTCH; Transcriptional regulator SUPERMAN like
STRINGVIT_05s0049g00080.t012e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-22C2H2 family protein