PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn066701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 580aa    MW: 64387.2 Da    PI: 7.2819
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn066701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.5e-20771472799
                 ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + ++e++ t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +++ l+v+++r+
  Achn066701  77 MADPETDETILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAENGDLCVGIRRA 147
                 456677889************************************************..4488999****997 PP
2Auxin_resp116.52.2e-38172255183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Prast+eF+v+++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Achn066701 172 AATLAANGQPFEVVYYPRASTPEFCVRASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 255
                 68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1959148IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1160148IPR003340B3 DNA binding domain
PfamPF023623.4E-1862147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-2364150IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-1579146No hitNo description
PROSITE profilePS5086311.92885148IPR003340B3 DNA binding domain
PfamPF065071.7E-33172255IPR010525Auxin response factor
PROSITE profilePS5174514.696493573IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MITFIDSKDK VMDAEKCLDS QLWHACAGSM VQMSPVNTKV FYFPQGHAEH ASGNVDFRNF  60
PKIPSYIACR VLGIKFMADP ETDETILAKD VHGETWKFRH IYRGTPRRHL LTTGWSNFVN  120
HKKLVAGDSI VFLRAENGDL CVGIRRAKRG IGAGSGSSTR REKVKPESVI EAATLAANGQ  180
PFEVVYYPRA STPEFCVRAS LVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV  240
ADPIRWPDSP WRLLQVTWDE PELLQNVKHI SPWLVELVSN IPTIHLSPFS PPRKKLRLPQ  300
HPDFPLDCQF QLPTFSSNLF GPTSPFNCLP DNPPAGMQGA RHAQYGLSLS DLHLNKLHSG  360
FFPATFPSFG NVATHNRPSN PLITHKPSSR ETVSCLLTIG NSTETSEKSD AKGTQFVLFG  420
KPILTEQQLS LSCSGDPISP VHNGNSSSEG NADKMANISD GSGSGTHLPL RSTCEGLQWC  480
KYSHRETETG LEIGHCKVFM ESENVGRNLD LSMLGSYEEL YRKLASMFDI ESSEMMNHVL  540
YWDVTGSVKQ VGDEPFCDFM KTAKRLTILT DSSSDNVGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-4674276187388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027336.20.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2R6R7X70.0A0A2R6R7X7_ACTCH; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-172auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]