PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn066211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 405aa    MW: 44012.2 Da    PI: 5.5262
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn066211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-13169219155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Achn066211 169 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 219
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.53265134IPR001471AP2/ERF domain
SMARTSM003801.4E-499140IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-6105136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-8105134IPR001471AP2/ERF domain
PfamPF008475.0E-8169219IPR001471AP2/ERF domain
CDDcd000182.75E-25169229No hitNo description
SuperFamilySSF541719.81E-17169228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-16170227IPR001471AP2/ERF domain
PROSITE profilePS5103215.079170227IPR001471AP2/ERF domain
SMARTSM003801.6E-31170233IPR001471AP2/ERF domain
PRINTSPR003673.4E-6171182IPR001471AP2/ERF domain
PRINTSPR003673.4E-6209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLDLNLTAMP TDSISDGQMD DSGASNSSLL NVETSSVAVD EESSSTHENT FAYSFGILKN  60
YESEENNGNR EARLGFVSKQ LFPASVGGGG IEWLDLSCRA ASSGGGFDTA HAAARAYDRA  120
AIKFRGLDAD INFNISDYDA DLKQMKNLTK EEFVHILRRH STGFSRGSSK YRGVTLHKCG  180
RWEARMGQFL GKKYIYLGLF DNEVEAARAY DKAAIKCNGK EAVTNFEPST YEEELSSEAG  240
NGGIESSHNL DLNLGIATNY FADGQRGNND LNSGPHFHCG PTDVHSENSG PTMATQPPHG  300
QIMVSDHPPL WRGVNSNVFP IYEGRAIEKG LEFDSSRSWA WQRPFGGTAS LPFFSTAASS  360
GFATSSVTAS STDVHHPHFL NSTFPSHYPP PITNSNNISQ LYRN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097117.11e-150APETALA2-like protein 3 isoform X2
SwissprotB8AXC31e-77AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2R6R8710.0A0A2R6R871_ACTCH; Ethylene-responsive transcription factor RAP2-7 like
STRINGXP_009606014.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-77related to AP2.7