PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn066211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 405aa MW: 44012.2 Da PI: 5.5262 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6e-13 | 169 | 219 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Achn066211 169 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 219 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.532 | 65 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-4 | 99 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-6 | 105 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-8 | 105 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-8 | 169 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.75E-25 | 169 | 229 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-17 | 169 | 228 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-16 | 170 | 227 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.079 | 170 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 170 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 171 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 209 | 229 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MLDLNLTAMP TDSISDGQMD DSGASNSSLL NVETSSVAVD EESSSTHENT FAYSFGILKN 60 YESEENNGNR EARLGFVSKQ LFPASVGGGG IEWLDLSCRA ASSGGGFDTA HAAARAYDRA 120 AIKFRGLDAD INFNISDYDA DLKQMKNLTK EEFVHILRRH STGFSRGSSK YRGVTLHKCG 180 RWEARMGQFL GKKYIYLGLF DNEVEAARAY DKAAIKCNGK EAVTNFEPST YEEELSSEAG 240 NGGIESSHNL DLNLGIATNY FADGQRGNND LNSGPHFHCG PTDVHSENSG PTMATQPPHG 300 QIMVSDHPPL WRGVNSNVFP IYEGRAIEKG LEFDSSRSWA WQRPFGGTAS LPFFSTAASS 360 GFATSSVTAS STDVHHPHFL NSTFPSHYPP PITNSNNISQ LYRN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097117.1 | 1e-150 | APETALA2-like protein 3 isoform X2 | ||||
Swissprot | B8AXC3 | 1e-77 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A2R6R871 | 0.0 | A0A2R6R871_ACTCH; Ethylene-responsive transcription factor RAP2-7 like | ||||
STRING | XP_009606014.1 | 1e-123 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-77 | related to AP2.7 |