PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn065501

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 664aa MW: 76775.2 Da PI: 7.0265

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn065501	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.1	2.9e-23	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ +lel HnH+++ Achn065501 59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRLVDSKRWRIVELELGHNHPVS 143 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-21	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-24	265	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-4	558	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MEVVCLNSEP VFDDGDEYED EGDCSLMEQD DEMGETQSKK EPPPPTVGLE FESFDEAYDF 60 YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV 120 IRLVDSKRWR IVELELGHNH PVSPDTKQFY KSHKKMILAA KKAHRSEPVR EVHTIKLYRA 180 ASVDAVCNGY SDVDEREGRN PVNQSKHLEL KEGDAHAVYN YFCRMKLTNP NFFYLMDLDD 240 EGRLRNVFWA DARSRAAYSH FSDTITIDTT CLANKFEIPL ISFVGVNHQG QSILLGCGFL 300 GHESTEYFVW IFRAWLTCML QHPPQVIVTD QSKPLQNAVS LVFPGARHCY CLGYIMQRVP 360 ERLGGLKGFE AIKRQLNKAV YDSLKIAEFE TCWGDMIERH GLGDSKWLQA LYGDRQRWVP 420 VYLKDIPFAG MIPIKENEGF NAFFDGYVHK HTSFKEFIDK YDLALQRKHL KEAMGDLESR 480 NSSFELKTRC NFELQLSKVY TKEIFKKFQS EVEGMYSCFN TRQVNVSGPI TTYVVKERVE 540 VEGSEKEVRC YEVLYETTKA DIRCICSLFN FKGYLCRHAL NVLNYNGVEE IPPRYILPRW 600 CKDFKRRYPI DYGGSDADVN NPGQWYNHLY RRVVQVVEEG AQSQEHYKAV LQGLEELLHK 660 LSL*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MEVVCLNSEP VFDDGDEYED EGDCSLMEQD DEMGETQSKK EPPPPTVGLE FESFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV  120
IRLVDSKRWR IVELELGHNH PVSPDTKQFY KSHKKMILAA KKAHRSEPVR EVHTIKLYRA  180
ASVDAVCNGY SDVDEREGRN PVNQSKHLEL KEGDAHAVYN YFCRMKLTNP NFFYLMDLDD  240
EGRLRNVFWA DARSRAAYSH FSDTITIDTT CLANKFEIPL ISFVGVNHQG QSILLGCGFL  300
GHESTEYFVW IFRAWLTCML QHPPQVIVTD QSKPLQNAVS LVFPGARHCY CLGYIMQRVP  360
ERLGGLKGFE AIKRQLNKAV YDSLKIAEFE TCWGDMIERH GLGDSKWLQA LYGDRQRWVP  420
VYLKDIPFAG MIPIKENEGF NAFFDGYVHK HTSFKEFIDK YDLALQRKHL KEAMGDLESR  480
NSSFELKTRC NFELQLSKVY TKEIFKKFQS EVEGMYSCFN TRQVNVSGPI TTYVVKERVE  540
VEGSEKEVRC YEVLYETTKA DIRCICSLFN FKGYLCRHAL NVLNYNGVEE IPPRYILPRW  600
CKDFKRRYPI DYGGSDADVN NPGQWYNHLY RRVVQVVEEG AQSQEHYKAV LQGLEELLHK  660
LSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069480.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_028069481.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_028093005.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_028093006.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6QMP1	0.0	A0A2R6QMP1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOY29441	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]