PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn060451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 753aa    MW: 83409 Da    PI: 5.4473
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn060451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.8e-24158259199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el+
  Achn060451 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELVARDLHGVEWKFKHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEGGELR 253
                 99****************************9977754.569************************************************..4499**** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  Achn060451 254 LGIRRA 259
                 ***996 PP
2Auxin_resp27.21.7e-103003245882
  Auxin_resp  58 rlsGtvvgvsdldpvrWpnSkWrsL 82 
                 r+sG+v+g++d+dp+rWpnSkWr+L
  Achn060451 300 RCSGVVTGIRDSDPYRWPNSKWRCL 324
                 679*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43149274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-38153269IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-23156258No hitNo description
PROSITE profilePS5086312.76158260IPR003340B3 DNA binding domain
PfamPF023629.5E-22158259IPR003340B3 DNA binding domain
SMARTSM010195.0E-24158260IPR003340B3 DNA binding domain
PfamPF065077.2E-6300324IPR010525Auxin response factor
PfamPF023095.4E-6620709IPR033389AUX/IAA domain
PROSITE profilePS5174523.164624708IPR000270PB1 domain
SuperFamilySSF542773.68E-10625703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MRVAESGFFF MEIDLNTCDN GGCLSSSNSS SCSSNSSSSP AAASIDKELW SACAGPLTSL  60
PKKGNVVVYF PQGHLEQTGS SAPFPHLEVA NFDLQPQIIC KVMDVHLLAN KENDEVYTQL  120
TLLPRPELEV INLEGKDHED VGLEEEGGLT PTNTLHMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYK LQRPSQELVA RDLHGVEWKF KHIYRGQPRR HLLTTGWSIF VSQKNLVSGD  240
AVLFLRGEGG ELRLGIRRAV RPRNGLPDSI LANQNYQNIL SHLATAVSTK STFRVFYSPR  300
CSGVVTGIRD SDPYRWPNSK WRCLMVRWDE DSTSDHQEQV SPWEIDPSVS LSPLSIQGSP  360
RLKKLQEDLP ATPPNNPIAG VGGFLDFEES LRSSKVLQGQ ENAGLLSPLY GRDKLNRPLD  420
FEMQSFALQS LTSNGKEKVN FSEFMKSQQP TTYTGFAESS RFPKVLQGQE ICSLRSLTGN  480
SDFNLGAWSR PDLGCNFLNM YQRPKPNFYP LGSEGVRNVY FPCNDIHKAA QDPVILSHVT  540
NFQRENITFK GSSVQIGFTR DEVTKQNLPK ETPQGNIAGP PTSKASFKNV NDEISNGTMA  600
GFKLFGCTLT GETPVLNSQS SNKRSCTKVH KQGNLVGRAI DLSRLNSYED LLIELERLFS  660
MEGLLRDPDM GWRILYTDDE NDMMVVGDDP WPEFCGMVSK IHIYTQEEVE KMTIGMISDD  720
TQSCLEEAPA IMGVSKSSSV GQPDSPPTLI QM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-91313522359Auxin response factor 1
4ldw_A1e-91313522359Auxin response factor 1
4ldw_B1e-91313522359Auxin response factor 1
4ldx_A2e-91313522359Auxin response factor 1
4ldx_B2e-91313522359Auxin response factor 1
4ldy_A1e-91313522359Auxin response factor 1
4ldy_B1e-91313522359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127003.10.0auxin response factor 4-like isoform X1
RefseqXP_028127004.10.0auxin response factor 4-like isoform X2
RefseqXP_028127005.10.0auxin response factor 4-like isoform X3
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2R6P7J00.0A0A2R6P7J0_ACTCH; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]