PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn060231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 1550aa    MW: 170978 Da    PI: 4.4939
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn060231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-182784457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Achn060231 27 YVRYTAEQIEALERVYAECPKPSSLRRQQLIRDCpilaNIEPKQIKVWFQNRRCREKQ 84
                5789****************************************************97 PP
2START1097.5e-351653802202
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGG.................CT-TT-SEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddke.................qWdetlakaetle 83 
                 +aee+++e+++ka+ ++  W       +g++++ +f+ s+++sg a+ra+g+v  ++++ +++     +                  W +++++ e+  
  Achn060231 165 IAEETLAEFLAKATGTAVDW-------PGPDSVGIFAISHSCSGVAARACGLVSLEPTKFLKQAESN-QyvcldfgqiaeilkdrpSWFRDCRSLEVFT 255
                 67888888888888888888.......58999*********************99999554444333.258888888888888888**********999 PP

                 EECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  84 vissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                     g  g+++l++++ +a+++l+p Rdf+++Ry+  l  g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s +++v+h + ++++
  Achn060231 256 MFPAGngGTIELIYTQIYAPTTLAPaRDFWTLRYTTNLDNGSLVVCERSLSGSGAGPNpsaAAQFVRAEMLPSGYLVRPCEGGGSIIHIVDHLNFEAWS 354
                 9999999********************************************988777777999************************************ PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXX CS
       START 177 phwllrslvksglaegaktwvatlqr 202
                 ++++lr++++s+ + +++++   l++
  Achn060231 355 VPEVLRPFYESSKVVAQQMTIPSLRY 380
                 **************999998877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0462185IPR001356Homeobox domain
SMARTSM003892.5E-142389IPR001356Homeobox domain
SuperFamilySSF466899.41E-162490IPR009057Homeodomain-like
CDDcd000864.63E-152686No hitNo description
PfamPF000461.4E-152784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-172884IPR009057Homeodomain-like
CDDcd146861.14E-578117No hitNo description
PROSITE profilePS5084823.109155393IPR002913START domain
SuperFamilySSF559614.53E-25164385No hitNo description
SMARTSM002346.3E-23164384IPR002913START domain
PfamPF018521.4E-31165381IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-15165357IPR023393START-like domain
PfamPF086703.8E-26651737IPR013978MEKHLA
PfamPF044991.1E-348291053IPR007587SIT4 phosphatase-associated protein family
PfamPF044991.2E-2310541188IPR007587SIT4 phosphatase-associated protein family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1550 aa     Download sequence    Send to blast
MAMVVAQQHR ESSSGSIDKH LDAAGKYVRY TAEQIEALER VYAECPKPSS LRRQQLIRDC  60
PILANIEPKQ IKVWFQNRRC REKQRKEACQ LQTVNRKLSA MNKLLMEEND RLQKQVSQLV  120
CENGYMRQQL HSASAATTDA SSDSAVTTPQ HSLRDASNPA GLLSIAEETL AEFLAKATGT  180
AVDWPGPDSV GIFAISHSCS GVAARACGLV SLEPTKFLKQ AESNQYVCLD FGQIAEILKD  240
RPSWFRDCRS LEVFTMFPAG NGGTIELIYT QIYAPTTLAP ARDFWTLRYT TNLDNGSLVV  300
CERSLSGSGA GPNPSAAAQF VRAEMLPSGY LVRPCEGGGS IIHIVDHLNF EAWSVPEVLR  360
PFYESSKVVA QQMTIPSLRY IRQIAQETSG EVVYGMGRQP AVLRTFSQRL SRGFNDAVNG  420
FNDDGWSIMN CDGTEDVIVA VNSTKSLGIT SSHSNSLSSL GGILCAKASM LLQNVPPAVL  480
IRLLREHRSE WADFNIDAYS ASALKASSFA YPGMRPMRFT GNPIIMPLGY TIEHEEMLEV  540
IRLEGHSLAQ EDAFVSRDIH LLQCDTQDTL TAHRTLDLTS SLEVGPATNS ASGDASSNYN  600
ARSVLTIAFQ FPFENSLLDN IAAMARQYVR SVISSVQRVA MAISPSRLNP TSLPVFIFAN  660
QAGLDMLETT LVALQDITLD KIFDDSGRKA LYSDFAKIMQ QGFACLPAGI CMSTMGRHVS  720
YEQTIAWKVL AAEETTVEQV LDKENFTLEK LLDEEEIIQE CKALNSRLIN FLRDRAQVEQ  780
LLRYIVEEPL EDADSKRIFK FPFIACEIFI CEIDVILKTL VEEEEVVICL MVRKTVPLMN  840
YVQAHQDVFG QLVDLIGITS IMEVLIRLVG TDDHIYPNSL DVMQWLVDSS LLEMIVDKLS  900
PLSPPEVHAN AAETLCAITR NSSSTLAVKL SSPSFVARIF GHALEESKSK SGLVHSLSVC  960
ISLLDPKRSI PSPIIPSFRS QRMYESSTPV NAETVGAMLP KLGDLLMLLN VSSDEKILPT  1020
TYGELRPPLG KHRLKIVEFI VVLLKTGNEA AEKELISSGT IQRVLDLFFE YPFNNALHHH  1080
VESIVLSCLE NKNNTIVDHI FRECNLIGKL LQTDKHPILS SDLNQPTLPA AEKQTPRAGN  1140
LGHITRISNK LVQLGNSNNR IQAFLQENSE WNDWQTTVLQ ERNMVENVYR WVCGRPTALQ  1200
DRTRDSDEDD LHDRDYDVAA LANNLSQAFR YSIYDNEDAE EGNRSLDRDD EDVYFDDESA  1260
EVVISSLRLG DDHGSLFTNS NWFAFQDDRI GDAPMSTSAV EMMDEINLNG TSGNGNSSSD  1320
DEVVVGEDEE LSESSSSANG TLSSDTNIAN RLAANNSANG NFVPQNEKLS ASGDLGFFRF  1380
ETPDEDFFGD RPLPEWVGWG ESSDFQVGGS SVNPFEEPIN SSVNLAANPA EEEAWHVGSP  1440
SSGEIVPNGN STAMDMSDGP VGSDSSQRAV AVPSLFEEDV EFVGVELEGT EKAMEQALKE  1500
GIVGEAGALK RSVIPKLPEK ENADESGTGM KEFNDANYWR VDQEVAVLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070571.10.0serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1
TrEMBLA0A4P1RA900.0A0A4P1RA90_LUPAN; Uncharacterized protein
STRINGcassava4.1_001610m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein