PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn059301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CAMTA
Protein Properties Length: 724aa    MW: 81376 Da    PI: 7.4424
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn059301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-141.91.9e-132294774
        CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLK 74
                +r+frkDG++wkkkkdgktv+E+he+LK
  Achn059301  2 LRNFRKDGHNWKKKKDGKTVKEAHEHLK 29
                79*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010765.2E-4154IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143722.161189IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-8229IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-4229316IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.08E-15230316IPR014756Immunoglobulin E-set
SuperFamilySSF525406.64E-7522623IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.035557583IPR000048IQ motif, EF-hand binding site
SMARTSM0001547572594IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236573602IPR000048IQ motif, EF-hand binding site
SMARTSM000156.7E-4595617IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.255596620IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4599617IPR000048IQ motif, EF-hand binding site
SMARTSM0001518675697IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.645677705IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MLRNFRKDGH NWKKKKDGKT VKEAHEHLKN LDYEDDGNSR TLEHIVLVHY RETQEGSSVT  60
PVYSNSSSGL SDPSASWILS EETESGSDPA YYTAGKVQLG KTSCFEEQNQ FGTNGFPSNV  120
TMLSGNKLPA KDSFGSLSEA VARSNYISNF LRKDPQLVTV GTGDSSDILG KDGLQTQDSF  180
GRWINDIMTD TPGSLDDSNV ESSISTGHGL SPSPMMDHLQ SPVSGQIFSI TDVSPAWAFS  240
TEKTKILITG FFNEVPPHLE KSKIYCVCGD ACYPAEIVQS GVFRCLVSPH THGYVNLYLS  300
FDGRIPISQV LTFEYRIPLM HDPITSVDDK SKWEEFRVQM RLAHLLFSSS KSLKVLSSKV  360
SPKSLKDAKI FARKTSHIAD GWAYMIEAIE NKNISFQQAK DSLFEITLKN RLYEWLLERV  420
VEGCKPSDYD DQGAKPNLVT DPNSENPGGC IAADLASKCG HDGLAAYLAE KALVEHFQDM  480
TIAGNVSGSL QTASPELVDP RTLNEDELFL KDTLAAYRTA ADAAARIQAA FREQSFKLQT  540
KAVEVLSPED EVRNIIAAMK IQHAFRKYET RKKMAAAARI QHRFRTWKIR REFLNMKRQA  600
IKIQAVFRGF QARRQYRKIV WSVGVLEKAI LRWRLKRKGF RGLEVSPDEA VVIDPKQESD  660
VEAFFLASRN QAEERVERSV VRVQALFRSK IAQREYQRMK LAYNEAMLEY EGIVTSDDAF  720
DER*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075463.10.0calmodulin-binding transcription activator 5-like isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A2R6PVZ30.0A0A2R6PVZ3_ACTCH; Calmodulin-binding transcription activator 5 like
STRINGVIT_05s0077g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]