PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn059051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 699aa    MW: 77812.4 Da    PI: 8.9732
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn059051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.1e-29163219158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++I++RR +Rak+e+ +k   k rkpylh SRh hA+rRpRg+gGrF
  Achn059051 163 DGPIYVNAKQYHGIIRRRLSRAKAESVNKA-LKDRKPYLHLSRHLHAMRRPRGCGGRF 219
                 57***************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.2E-34161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.426162222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-22165187IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-26165219IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.3E-22196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MTMHTVYLKE HDGIVQNPTS QLPPAAVPWW SGHGSQSAHT ESFGQFKTSF LENPSGGGQN  60
KQVDRGTKQG LEKGNKARFT ILQGDCKTSP NMPVQSATSE YQGRFELGFG QPVFKNAYYF  120
LVSELTQICA KYPYGDQCYG VFSTYGPQIT GRIMLPLNLT TDDGPIYVNA KQYHGIIRRR  180
LSRAKAESVN KALKDRKPYL HLSRHLHAMR RPRGCGGRFL NTKSSKGAKG GNEPEKTGNR  240
HLFQPAESQI SEVLQSDSGN LSSPKEANGS RTHLSGSEVT SLFYRGDADR FAFNHLRPSV  300
LSLTDMMNTG QGRAMPTIGN SSLATCPVSI TVVFATPWTA EVLVWIDILE PSLCNKWARL  360
KKGFIPVSEL NYGCVVFMFV YLEVVEVDAV KVSTLSPDFK LDNVMYLNKT MEESFRRRLL  420
RKKEKKDFLT ALPVGFVDPL PLKNAPLQLL APPKPQSAVK AHPKKAKEVY GKTFPYYDDW  480
AILFGRDRAT GAEAEDPKQM EQVYTPNPLQ DSVVDDVEDF YAPLFDDQFM NSPYVSVSST  540
PTSSTPHTET PSIPTPTGSA PDTATHSTFT PQPPPHRMQI PMSSTLQANA KATKGRKRTR  600
MGDVEDVREE LGHWCKESLG YMEKLANSLG YEKELTARRA TIPGELEKLD LTLIQQFKLA  660
AIIGDKEERV DQFLNTRDER KQAWAEAVLN GHIYGPIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-16163220260HAPB protein
4g92_A4e-16163220260HAPB protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-50nuclear factor Y, subunit A10