PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn058491

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 573aa MW: 62741.2 Da PI: 7.0133

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn058491	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.9e-37	198	257	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPry+Ck+C+ryWt+GG+ rnvPvG+grrknk+ Achn058491 198 PDKVLACPRCNSLETKFCYFNNYNVNQPRYYCKNCQRYWTAGGTTRNVPVGAGRRKNKHI 257 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	22	No hit	No description
ProDom	PD007478	2.0E-27	195	255	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-30	199	256	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.717	202	256	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	204	240	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MEHKGLVPVL VLFLGFSFVL SCVAVPTSRS GPFSLVERNQ FESPFLNHFP LSHFFNNFDY 60 VKVKKFNQMW VNGVSNYDSL KKMNGGDALE TNKDSAIKLF GKTIPVPESH IPVNSEEISY 120 VGCQIPSKSE AQDLCKEITK MEAKDIHLAK SGNQGKYSVK YEDEQITGDE NEGQANVKTV 180 KDQVETSGIE TEKTLKKPDK VLACPRCNSL ETKFCYFNNY NVNQPRYYCK NCQRYWTAGG 240 TTRNVPVGAG RRKNKHIVSH YRQVLASPDT IPASGIEILD SANQQSLSSG ESRSHLRALT 300 SNGTLIKFGP EGRLCQSMAT VHLTDHNGVT SDLGSTRETI EEPSLCGSSI PPSSIKENSI 360 HEKANQHGSL NGSCIQLIQP NALQYYPVPP WIFPQNQVSN SGAQCSSELV SAPDDRNPIQ 420 WCPTPMLPVP GFYAPTVPLQ FVPASNWGYL PVCTVGTRVR SDVGLSSSSS TSNGCSGNNS 480 PTLGKHSRDG NSMDEEGSEN CVLVPKTLRI DDPYEASKSS IWATLGFNSN PKETDSRCGI 540 FRPYKSSGHQ SEGTEVLEAA ALSRSHTFQE ST*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MEHKGLVPVL VLFLGFSFVL SCVAVPTSRS GPFSLVERNQ FESPFLNHFP LSHFFNNFDY  60
VKVKKFNQMW VNGVSNYDSL KKMNGGDALE TNKDSAIKLF GKTIPVPESH IPVNSEEISY  120
VGCQIPSKSE AQDLCKEITK MEAKDIHLAK SGNQGKYSVK YEDEQITGDE NEGQANVKTV  180
KDQVETSGIE TEKTLKKPDK VLACPRCNSL ETKFCYFNNY NVNQPRYYCK NCQRYWTAGG  240
TTRNVPVGAG RRKNKHIVSH YRQVLASPDT IPASGIEILD SANQQSLSSG ESRSHLRALT  300
SNGTLIKFGP EGRLCQSMAT VHLTDHNGVT SDLGSTRETI EEPSLCGSSI PPSSIKENSI  360
HEKANQHGSL NGSCIQLIQP NALQYYPVPP WIFPQNQVSN SGAQCSSELV SAPDDRNPIQ  420
WCPTPMLPVP GFYAPTVPLQ FVPASNWGYL PVCTVGTRVR SDVGLSSSSS TSNGCSGNNS  480
PTLGKHSRDG NSMDEEGSEN CVLVPKTLRI DDPYEASKSS IWATLGFNSN PKETDSRCGI  540
FRPYKSSGHQ SEGTEVLEAA ALSRSHTFQE ST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069308.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2R6QVL4	0.0	A0A2R6QVL4_ACTCH; Cyclic dof factor like
STRING	cassava4.1_028076m	1e-145	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21330	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-60	cycling DOF factor 2