 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Achn058441 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
| Family | LBD | ||||||||
| Protein Properties | Length: 198aa MW: 21275.6 Da PI: 8.6824 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 60.3 | 5.4e-19 | 29 | 125 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+C aCk+lrrkC+ +Cv+ap+f ++q +++fa+vhk+FGasnv+kll ++p ++ + ++v + r v +a++ ++ qqq ++ ++++a+l
Achn058441 29 PCGACKFLRRKCVGGCVFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVASLQAEL-AMVQTQLINSRLAVANAFQNTKQQQQQQQHQQQQIAVL 125
7***********************9989*********************9877644333.23333344445556666666666666666666666655 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 13.508 | 28 | 133 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 7.6E-20 | 29 | 126 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 198 aa Download sequence Send to blast |
MADPHTSDGR RKPSVKRATS AADATAAPPC GACKFLRRKC VGGCVFAPHF GSDQGAARFA 60 AVHKVFGASN VSKLLLHIPV ASLQAELAMV QTQLINSRLA VANAFQNTKQ QQQQQQHQQQ 120 QIAVLQPAYS NNSSTSNNQL INTTTFNPSF DLTAETAPSS HSFEPPQLSR RPSQDGEEGE 180 EESRDPVAFA NHSLHSR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 2e-16 | 26 | 79 | 8 | 60 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-16 | 26 | 79 | 8 | 60 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002271115.1 | 2e-68 | PREDICTED: LOB domain-containing protein 20 | ||||
| Swissprot | Q9SRV3 | 2e-40 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
| TrEMBL | A0A438DI50 | 3e-67 | A0A438DI50_VITVI; LOB domain-containing protein 20 | ||||
| STRING | VIT_08s0056g01650.t01 | 7e-68 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA43 | 24 | 669 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03760.1 | 4e-37 | LOB domain-containing protein 20 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|