PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn057721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 53091.3 Da PI: 6.0869 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.5e-06 | 230 | 251 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Achn057721 230 FCMICGKGFKRDANLRMHMRGH 251 5*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.75E-5 | 227 | 254 | No hit | No description |
PROSITE profile | PS50157 | 11.697 | 229 | 256 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0057 | 229 | 251 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.2E-6 | 230 | 280 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 231 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 278 | 311 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 36 | 316 | 338 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MDERLCADTW TESSSLVNEL PKKVPPDLQP LTNLNLQQYQ QKWEEDPSIQ DYAMTIEPQF 60 PEFNQPCETP SSVACNPSNQ TKNEPLDASR IQDWDPRAML NNLSFLEQKI HQLQDLIIVQ 120 LISTAGSLLP SVTQTLSSNG TPSISQLGQL SGVVFPSGPN LNGNVIPQTS KVSDQSNHVD 180 LTGNCKTEQN CIEDELKDED DAEDGEHLSP GSYEILQLEK EEILAPHTHF CMICGKGFKR 240 DANLRMHMRG HGDEYKTPAA LAKPNKETNS EPMLIKRYSC PYAGCKRNKD HKKFQPLKTI 300 LCVKNHYKRT HCDKSYTCSR CHTKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG 360 HIALFQGHTP AIPLDEAKGS AAGSSDRGEN REATNKLGTN FSCGSGVQNG NDAKGSIDDP 420 TSFFSPLTFD TRNLAGFHDF PRPPYDDSET SFSFLMSGSC SYPQKTREES SSDKLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028062706.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 1e-173 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2R6RPC1 | 0.0 | A0A2R6RPC1_ACTCH; Protein SENSITIVE TO PROTON RHIZOTOXICITY like | ||||
STRING | VIT_18s0072g00840.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4754 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-166 | C2H2 family protein |