PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn057581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 17766.2 Da PI: 9.5122 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.3 | 4.2e-55 | 7 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppGfrFhPt+eelv +yL+kkv+++k++l +vi ++d+y++ePwd++ k + ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+vls k+ Achn057581 7 PPGFRFHPTEEELVGYYLNKKVNSHKIDL-DVIVDIDLYRMEPWDIQdKcrMGYEEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAVLS-KN 103 9****************************.99**************953433334677**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l+g++ktLvfykgrap+g+ktdW+mheyrl Achn057581 104 RLIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 134 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-56 | 5 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.607 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-29 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDVGCIPPGF RFHPTEEELV GYYLNKKVNS HKIDLDVIVD IDLYRMEPWD IQDKCRMGYE 60 EQNEWYFFSH KDKKYPTGTR TNRATTAGFW KATGRDKAVL SKNRLIGMRK TLVFYKGRAP 120 NGRKTDWIMH EYRLQTIEHA PPQASTSITN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-49 | 6 | 134 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059366.1 | 1e-95 | NAC domain-containing protein 30-like | ||||
Swissprot | Q9SL41 | 8e-87 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2P5DGV2 | 7e-94 | A0A2P5DGV2_PARAD; NAC domain containing protein | ||||
STRING | XP_004496367.1 | 7e-92 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 5e-70 | vascular related NAC-domain protein 7 |
Publications ? help Back to Top | |||
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