PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn057421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 615aa    MW: 69051.7 Da    PI: 6.148
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn057421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.35.1e-2963147187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++ e+laL+++r++m+ ++r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++  ++ +t+++fdqlea
  Achn057421  63 RWPRLETLALLQIRSDMDVAFRDSNLKGPLWEEVSRKLSELGYHRSSKKCKEKFENVYKYHRRTKEGRVSK--PDGKTYRFFDQLEA 147
                 8********************************************************************95..77789*******85 PP
2trihelix103.41.7e-32437521186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k ev+aLi++r++m+ +++++  k+plWee+s++mr+ g+ r++ +Ckekwen+nk++kk+ke++kkr +e+s+tcpyf++l+
  Achn057421 437 RWPKAEVQALIRLRTNMDLKYQENGPKGPLWEEISSAMRKIGYDRNARRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHDLD 521
                 8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.70256120IPR017877Myb-like domain
SMARTSM007170.01460122IPR001005SANT/Myb domain
CDDcd122031.35E-2162127No hitNo description
PfamPF138373.9E-1962148No hitNo description
PROSITE profilePS500907.259430494IPR017877Myb-like domain
SMARTSM007170.0096434496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-4435493IPR009057Homeodomain-like
PfamPF138373.9E-22436522No hitNo description
CDDcd122038.60E-27437501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MITKVTELTL FEVTKREKEP LMLGVSGMLG TSGDGGELGG AGGFSEEDKM RIEEGERNSA  60
GNRWPRLETL ALLQIRSDMD VAFRDSNLKG PLWEEVSRKL SELGYHRSSK KCKEKFENVY  120
KYHRRTKEGR VSKPDGKTYR FFDQLEALEN QAPPVPPLPP PPRPQTHPAT TATNLAVAMP  180
SANTIPPIFS HLTVPSTTGP ISGPQSTTII STISPQPPPP DTTIAATISA DPISFSFHGG  240
ITPSHLKMPV NLGSMSMSSS SSTSSDEEPE RHRKRKRKWT DFFQRLMNKV VEKQEEMQKR  300
FIESLERRER DRVAREEAWR AQEIARMNRE HDLLVHERSM AAAKDAAVIA FLQKVSEQQV  360
PSAPSVQMQN NSQPPPPKPT PLPQSQLELE IPQLPPLPPQ PPPQPLVQVQ VPPPPKSPKT  420
DNNSGENIIS SITSSSRWPK AEVQALIRLR TNMDLKYQEN GPKGPLWEEI SSAMRKIGYD  480
RNARRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHDL DVLYREKAKN ETTNNLGSGF  540
GVKMENPMAP IMVQPEQQWP LLQRHPESAV EDEESDQNNE GDHESDDEDD EDEDDEVGGY  600
EIVANKPSSV GAVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117969.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-140TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2R6QYI90.0A0A2R6QYI9_ACTCH; Trihelix transcription factor GT-2 like
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-57Trihelix family protein