PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn056131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 299aa    MW: 33419.2 Da    PI: 10.1562
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn056131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC993.6e-31221011997
       NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 h+lPlarikki+  + +dvkmis +aP+++skacelfi +lt rsw  a ++krrtl+k di++av  td+fdfl++ v 
  Achn056131  22 HSLPLARIKKIMNnSSDDVKMISGDAPIVFSKACELFIEQLTKRSWAVALQAKRRTLHKDDITSAVMATDVFDFLLNLVS 101
                 89**********725689*********************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.29E-241796IPR009072Histone-fold
PfamPF008084.8E-202387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.5E-2824100IPR009072Histone-fold
PfamPF037669.1E-6114139IPR005518Remorin, N-terminal
PfamPF037632.2E-19143237IPR005516Remorin, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MRQAGAYSGI ASGGISGRTG PHSLPLARIK KIMNNSSDDV KMISGDAPIV FSKACELFIE  60
QLTKRSWAVA LQAKRRTLHK DDITSAVMAT DVFDFLLNLV SDSTGTKDDG HQAIEVFSDP  120
ATEKKSGDAV DRDAVLARVE TEKRLALIKA WEESEKSKAE NKAYKKLSAI GAWEDSQKAN  180
IEAKLKMIEK AEYAEKMNNK KAEIRKVAEE KKAVIEANRG DDILKVEEIA AKFRATDLHS  240
KSHINPIKVL KTTANQLQPK SQAASHLYQF RWKIEQTWQQ PDRQFNIINL TKRRKEVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-26221001693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806887.11e-103remorin
TrEMBLA0A2H3Z1A31e-102A0A2H3Z1A3_PHODC; remorin
STRINGXP_008806887.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128811720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-28nuclear factor Y, subunit C3