PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn055531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 268aa    MW: 30366.1 Da    PI: 10.141
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn055531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.57.3e-1324107186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Liea  ++  +l+rg+l++++W+ev++ +     +++ +r+ +qCk++ + l+k++k +k           st+ ++++l+
  Achn055531  24 CWSEGATETLIEAWGDRYLKLNRGNLRQKDWKEVADSVnarrNSTKPRRTDVQCKNRVDTLKKKFKLEKSKPVP------STWLFYHRLD 107
                 7*************************************98766677799*****************99876664......6899999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2422109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNNNNHNVTS RPHHGGGSGG REDCWSEGAT ETLIEAWGDR YLKLNRGNLR QKDWKEVADS  60
VNARRNSTKP RRTDVQCKNR VDTLKKKFKL EKSKPVPSTW LFYHRLDHLV GTTANAAVTP  120
SNKKTKPPTT VTLTVKSTPK PNPNPNPSPS PQGMVYLNSS GSNESSLRGG GGGRNDDDVR  180
KHSRTDYGDF SEESAYKELA RAILRFGEIY ERIESSKQQQ MMELEKQRME FTKDLEFQRM  240
NMFMEAQLEL EKMKRPTKYA PATGEFP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166825.11e-100PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG86e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6RR720.0A0A2R6RR72_ACTCH; Trihelix transcription factor (Fragment)
STRINGPGSC0003DMT4000771991e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.17e-34sequence-specific DNA binding transcription factors