PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn055521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 23531 Da PI: 9.2697 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 39 | 85 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +ve +k+L Achn055521 39 KRHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVEQVKDL 85 569************************8.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.55E-10 | 34 | 88 | No hit | No description |
SuperFamily | SSF47459 | 1.11E-12 | 34 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.684 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 39 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-14 | 40 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 1.83E-6 | 118 | 191 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.2E-7 | 120 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVSVKSNESM ATTFQIHGGY DSSWSMPFGG NKEDGSASKR HSQAEKRRRD RINAQLATLR 60 KLIPKSDKMD KAALLGSVVE QVKDLKRKAM EVTKFITVPT EVDEVTIDSY LDQDGEDFIR 120 ASLCCDDRPE LLAELTQALH GLKLTITRAD MACLGGRIKG ILVLCNRDGE EGVGLNHIKQ 180 SLKGVLGRIA LSSSGVSYSM KSKRQRFFTP CHV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 205 | KSKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028091628.1 | 3e-86 | transcription factor bHLH51-like | ||||
TrEMBL | A0A2R6RR80 | 1e-151 | A0A2R6RR80_ACTCH; Transcription factor bHLH51 like | ||||
STRING | XP_009345143.1 | 2e-80 | (Pyrus x bretschneideri) | ||||
STRING | XP_008374114.1 | 2e-80 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5820 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-43 | bHLH family protein |