PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn054041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 532aa    MW: 59095.7 Da    PI: 4.5343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn054041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82e-5381351128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelvv+yLk+k++gk++++ ++i+e+d+yk+eP+dLp k ++k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd++vl+ k 
  Achn054041   8 LAPGFRFHPTDEELVVYYLKRKISGKPFRF-DAIAEIDVYKSEPSDLPdKsRLKSKDLEWYFFSFLDKKYGNGSRTNRATERGYWKTTGKDRPVLH-KA 104
                 579**************************9.99**************96347777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+++grap+ge+t+Wvmheyrl
  Achn054041 105 QTVGMKKTLVYHSGRAPRGERTNWVMHEYRL 135
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-564140IPR003441NAC domain
PROSITE profilePS5100552.0598176IPR003441NAC domain
PfamPF023652.5E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MALDKASLAP GFRFHPTDEE LVVYYLKRKI SGKPFRFDAI AEIDVYKSEP SDLPDKSRLK  60
SKDLEWYFFS FLDKKYGNGS RTNRATERGY WKTTGKDRPV LHKAQTVGMK KTLVYHSGRA  120
PRGERTNWVM HEYRLIDEQL EKSGNFQKSG SGPKNGEQYG APFIEEEWVE EELVMVPGNE  180
AAEDDDAYVN GNDIDQIFGV NIPSEDVPPL PFSFYYGDDS SNVQKHVDFV DGAQKLLVPD  240
SESYYSPEQP TDTKLLDFPV ENHMVTTPVK DEYTGEPSNT VNSVDADYLL DEPFFDATSY  300
FPFGFEEFLE TNDLSNPIEV DGYDALCEHF TFFDPEAFDA SMMTGSESIE TKQALFQKPV  360
SDGAQQESIG SQQQLSQGHG NDIACSANQK PGNSGSGTQS SAVKKASRML GDIDAPPAFA  420
SEFPEKGAAL LLNSASHSSN PVHTVARMIH IGDMARTYWS LEKRPDYNIL LSLALSKNDA  480
NSASLEPMAG IHTGKVGSIM AWGWLYLFFV WALILSASCK IGSYFYKGNA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-45713514140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124170.10.0NAC domain-containing protein 78-like
TrEMBLA0A2R6PYN50.0A0A2R6PYN5_ACTCH; NAC domain-containing protein
STRINGEOY188601e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-124NAC domain containing protein 53