PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn053731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 426aa    MW: 47906.9 Da    PI: 8.861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn053731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10243286755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri+++++ Lr l+Pk +      K++ a+i   A+eYI  Lq
  Achn053731 243 VTERNRRNRIRDGLFALRALVPKiS------KMDRASIPGDAIEYIEALQ 286
                 57*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.72E-9233290No hitNo description
PROSITE profilePS5088813.383236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-13240302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-11242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14243302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8244286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MIGYLTSFSK LPKKEMEICG CATEGSTIIT QQRPSTARRS LETPTSLAEK GLDLVGMVKS  60
EESTGTQVLI PVVGGLIELF SAKHIFKDQR VIEFVITQYK ITMEQEAITA QHNSGLSLNI  120
QPRDPLLGEH LTVWPHPMQD LNYFPRLQFL TPVSQPNHHP SLKGSSTGSN PSNEHPSFNS  180
GSIPLSPNGS VNETIKKYPI CKKSDSNGHL SYNQESEFLL GDSNHLKPKQ RMERKLYHSK  240
NLVTERNRRN RIRDGLFALR ALVPKISKMD RASIPGDAIE YIEALQKTVK ELKDELRAME  300
EEECKHKSHQ HVIRDLNAIK DPVTSTTTEH NHDGSIMENI EMQVEVYQIG IRDFLLKLLC  360
KQKQGGFVRL MEALNSLGLL VIDANVSTYS GKVLNMLKVE VNKSEFQPKS LKDSLIKLVR  420
QTYQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097168.11e-129transcription factor ABORTED MICROSPORES-like isoform X4
TrEMBLA0A2R6RF270.0A0A2R6RF27_ACTCH; Transcription factor ABORTED MICROSPORES like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-40bHLH family protein