PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 314aa    MW: 34410 Da    PI: 6.2368
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.4e-17210244135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  Achn050821 210 CLHCASEKTPQWRTGPMGPKTLCNACGVRFKSGRL 244
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.6E-8216295IPR016679Transcription factor, GATA, plant
SMARTSM004013.3E-16204254IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.321204240IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.6E-14204241IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-14206267No hitNo description
CDDcd002023.45E-13209256No hitNo description
PfamPF003201.2E-14210244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METPELLAGG YFSPGSRYFE KKSTENVNNH FAIDDLLDFS KEDDVMTDAF FDNVNGNSTD  60
SSTVTAVDSC NSSVSGGEQQ FYGDISCRSF AEAQFAGELC VPYDDLAELE WLSNFVEDSF  120
SSDDLNNLQL ISAPKAAPNA TSSSQNTRAH APIFPSDVSF PGKARSKRSR AAPCDWSSRL  180
LLLSPSDSNS ASKTAPPKKR DAAETPGRKC LHCASEKTPQ WRTGPMGPKT LCNACGVRFK  240
SGRLVPEYRP AASPTFVSAR HSNSHRKVLE MRRQKEIQRQ HEFLSQSSVF AVSNGDDYLI  300
HHQTGGLDYT HMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094617.11e-145GATA transcription factor 9-like
SwissprotP697811e-80GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2R6QZX20.0A0A2R6QZX2_ACTCH; GATA transcription factor
STRINGVIT_09s0002g03750.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-78GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]