PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn050511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 275aa MW: 31176.3 Da PI: 6.2287 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.7e-40 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k+lk+l+++++++am+++++++++ra+dPv G++++i++l++q+e + +el+ + + Achn050511 13 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKILKKLDPHKKDAAMRTIIFQSDVRASDPVGGCYRIIRELHHQIEYSVVELQIVLQ 111 7*****************************************************************************************999998877 PP DUF260 100 e 100 + Achn050511 112 Q 112 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.67 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-37 | 13 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSNNTRPNGV PHACAACKYQ RRKCAPDCIL APYFPHDRQR QFLNAHKLFG VSNITKILKK 60 LDPHKKDAAM RTIIFQSDVR ASDPVGGCYR IIRELHHQIE YSVVELQIVL QQIAMCRAQI 120 DQQSQIPLYD LSTLSCADSS INHNPLGMCE EEYFLHENNH VVAFQDVATW AMQDTTSSSL 180 HDKEKFVNEG GDFKQTILHM DGDRLEFKFD CEETIQQSGA ISKEDGAKLK EEIASFISEE 240 DKAVIKEEIA TIEDAQTRDL KNATTHFCLK KWSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 9 | 99 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 9 | 99 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023929235.1 | 3e-73 | LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 7e-57 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2R6R099 | 1e-131 | A0A2R6R099_ACTCH; LOB domain-containing protein | ||||
STRING | cassava4.1_022118m | 1e-67 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-59 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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