PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn050511

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 275aa MW: 31176.3 Da PI: 6.2287

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn050511	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.2	7.7e-40	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k+lk+l+++++++am+++++++++ra+dPv G++++i++l++q+e + +el+ + + Achn050511 13 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKILKKLDPHKKDAAMRTIIFQSDVRASDPVGGCYRIIRELHHQIEYSVVELQIVLQ 111 7*****************************************************************************************999998877 PP DUF260 100 e 100 + Achn050511 112 Q 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.67	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-37	13	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSNNTRPNGV PHACAACKYQ RRKCAPDCIL APYFPHDRQR QFLNAHKLFG VSNITKILKK 60 LDPHKKDAAM RTIIFQSDVR ASDPVGGCYR IIRELHHQIE YSVVELQIVL QQIAMCRAQI 120 DQQSQIPLYD LSTLSCADSS INHNPLGMCE EEYFLHENNH VVAFQDVATW AMQDTTSSSL 180 HDKEKFVNEG GDFKQTILHM DGDRLEFKFD CEETIQQSGA ISKEDGAKLK EEIASFISEE 240 DKAVIKEEIA TIEDAQTRDL KNATTHFCLK KWSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-26	9	99	7	97	LOB family transfactor Ramosa2.1
5ly0_B	4e-26	9	99	7	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929235.1	3e-73	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	7e-57	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2R6R099	1e-131	A0A2R6R099_ACTCH; LOB domain-containing protein
STRING	cassava4.1_022118m	1e-67	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-59	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]